View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_high_6 (Length: 439)
Name: NF12865_high_6
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 37035004 - 37035416
Alignment:
| Q |
12 |
acagaggatatccaacctaacgatattggtattatcggttggttatactaggccttacgagactcaacattgtttttctctacatcgggaatgttcctaa |
111 |
Q |
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| T |
37035004 |
acagaggatatccaacctaacgatattggtattatcggttggttatattaggccttacgaaactcaacattgtttttctctacaccgggaatgttcctaa |
37035103 |
T |
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| Q |
112 |
atgattaaacattttttccttttgaaaacaaatattcccttgacattactttggttttttagaatcataaaaagctttgatctgtttcaaaacttcgatg |
211 |
Q |
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| T |
37035104 |
atgattaaacattttttccttttaaaaacaaatattcccttgacattactttggtttcttagaatcataaaaaactttgatctgtttcaaaacttcgatg |
37035203 |
T |
|
| Q |
212 |
gttacttttgtttcttcaa-cctcgtttagtggcaaagttactctttaggcttccaaatttctccatctattaaatggaactactagcattgagatgaca |
310 |
Q |
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| T |
37035204 |
gttacttttgtttcttcaacccccgtttagtggcaaagttactctttaggcttccaaatttctccatctattaaatgaaactactagcattgaaatgaca |
37035303 |
T |
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| Q |
311 |
tgcatttcaaaccacggatgctcctcatttttgtaccttgtgtgagagtggatgaatcgtcaactcatctttttctccattgtgaggttgccggaagggt |
410 |
Q |
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| T |
37035304 |
tgcatttcaaaccacggatgctcctcgtttttgtaccttgtgtgagagtggatgaatcgtcaactcatctttttctccattgtgaggttgccggaagggt |
37035403 |
T |
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| Q |
411 |
gtggcgtgatatt |
423 |
Q |
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| T |
37035404 |
gtggcgtgatatt |
37035416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 24189326 - 24189392
Alignment:
| Q |
349 |
tgtgtgagagtggatgaatcgtcaactcatctttttctccattgtgaggttgccggaagggtgtggc |
415 |
Q |
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| T |
24189326 |
tgtgagagggtggatgaatcgtcaattcacctctttcttcattgtgatgtagcgggaagggtgtggc |
24189392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 415
Target Start/End: Complemental strand, 12825730 - 12825637
Alignment:
| Q |
324 |
acggatgctcctcatttttgtaccttgtgtgaga--gtggatgaatcgtcaactcatctttttctccattgtgaggttgccggaagggtgtggc |
415 |
Q |
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| T |
12825730 |
acggatgctcctcagtgttgtaccttttgtgagacggtggatgaatcgtcaattcatctatttcttcattgtgaggttgccgtaagggtttggc |
12825637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 419
Target Start/End: Original strand, 47819967 - 47820066
Alignment:
| Q |
322 |
ccacggatgctcctcatttttgtaccttgtgtg--agagtggatgaatcgtcaactcatctttttctccattgtgaggttgccggaagggtgtggcgtga |
419 |
Q |
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| T |
47819967 |
ccacggatgcttcacatttgtgtaccttgtgcgggagaggggaggaatcgtcaattcatccttttcttcattgcgaagttgccggaagggtgtggcgtga |
47820066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 42749073 - 42749028
Alignment:
| Q |
370 |
tcaactcatctttttctccattgtgaggttgccggaagggtgtggc |
415 |
Q |
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|||| |||||||||||| ||||||||||||||||| || ||||||| |
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| T |
42749073 |
tcaattcatctttttcttcattgtgaggttgccggtagagtgtggc |
42749028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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