View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_high_9 (Length: 393)
Name: NF12865_high_9
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 12941041 - 12941405
Alignment:
| Q |
18 |
aaaaataaacataagataagataatgaagatggaagaaaaacaaactcttacctataacatcaacaacggttcttccattacaaaaacgacctgtgggtt |
117 |
Q |
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| T |
12941041 |
aaaaataaacataagataagataatgaagatggaagaaaaacaaactcttacctataacatcaacaacggttcttccattacaaaaacgacctgtgggtt |
12941140 |
T |
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| Q |
118 |
ttccaaaatcaattccataagggtgatgatttgctttggcaagtgaagtgatgtaattgttgttccctacatcgagcaaagaatcaccaaaaacaaatga |
217 |
Q |
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| T |
12941141 |
ttccaaaatcaattccataagggtgatgatttgctttggcaagtgaagtgatgtaattgttgttccctacatcgagcaaagaatcaccaaaaacaaatga |
12941240 |
T |
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| Q |
218 |
agcttgaattttatatgatatgctaaatttgaaagagagcaataatgtaaaaatcctaaacatattctcaaaaatgagttttgtgctcaaataataaaga |
317 |
Q |
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| T |
12941241 |
agcttgaattttatatgatatgctaaatttgaaagagagcaataatgtaaaaatcctaaacatattctcaaaaatgagttttgtgctcaaataataaaga |
12941340 |
T |
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| Q |
318 |
cccattggagagaaattttatgctaaaaaataggttcctcttgttttgtttggtttctctgctcc |
382 |
Q |
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| T |
12941341 |
ctcattggagagaaattttatgctaaaaaataggttgctcttgttttgtttggtttctctgctcc |
12941405 |
T |
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