View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_low_10 (Length: 407)
Name: NF12865_low_10
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 22274693 - 22274442
Alignment:
| Q |
15 |
cataggaacctaagacacaaaatgagcccgttattttccgagagatggggtttcaacttcatatttctaacacaattatgattcatacattattactatt |
114 |
Q |
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| T |
22274693 |
cataggaacctaagacacaaaatgagcccattattttccgagagatggggtttcaacttcatatttctaacacaattatgattcataaattattgctatt |
22274594 |
T |
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| Q |
115 |
taatagtttactactaaaaccagcacttccgaggaatcacaatttaccaagagtgtaatatccaacataaaagaaggaaaacatttgctttacaacaaaa |
214 |
Q |
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| T |
22274593 |
taatagtttactactaaaaccagcacttccgaggaatcacaatttaccaagagtgtaatatccaacataaaagaaggaaaacatttgctttacaacaaaa |
22274494 |
T |
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| Q |
215 |
taattgaaaagaaaagaaaacacttgaagcgttcaattctaacaaataagct |
266 |
Q |
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| T |
22274493 |
taattgaaaagaaaagaaaacacttgtagcgttcaattctaacaaataagct |
22274442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 22274154 - 22274063
Alignment:
| Q |
298 |
atatttggttccaagaattgttccacccagatattgaactcaaatgctctcgatcaattcaaccttaactaagactcattaaccactaaagt |
389 |
Q |
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| T |
22274154 |
atatctggttccaagaattgttccacccagatattgaactcaaatgctctcgatcaattcaaccttaactaagactcattaaccactaaagt |
22274063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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