View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_low_12 (Length: 360)
Name: NF12865_low_12
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 36400774 - 36401113
Alignment:
| Q |
16 |
cacttagtacactcatcacattcaaacactaatctattatcacttataaacactccaattggtttttataaactatatgatatgatatgattgatacata |
115 |
Q |
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| T |
36400774 |
cacttagtacactcatcacattcaaacactaatctattatcacttataaacactccaattggtttttataaactatatgatatgatatgattgatacata |
36400873 |
T |
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| Q |
116 |
tcaccttatcttgctattt---ttatatacttctcactgcaatccatcttgcactctttaactaattaaaaaggaaaaattattatccnnnnnnnnnngt |
212 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36400874 |
tcaccttatcttgctattttaattatatacttctcactgcaatccatcttgcactctttaactaattaaaaaggaaaaattattatccttttttttttgt |
36400973 |
T |
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| Q |
213 |
gcctaaaaaagttttcaatttttaaaatatgaaaattaacttagaagaaagattttttagcaggaggtcttccaactgctctcataagattagcaatctc |
312 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36400974 |
gcctaaaaaagttttcaatttttaaaatatgaaaactaacttagaagaaagattttttagcaggaggtcttccaactgctctcataagattagcaatctc |
36401073 |
T |
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| Q |
313 |
aagaactctagccactttagttcctctttttgcctttgct |
352 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
36401074 |
aagaactctagccactttagttcctctttttgcctctgct |
36401113 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 347
Target Start/End: Original strand, 21427486 - 21427581
Alignment:
| Q |
252 |
cttagaagaaagattttttagcaggaggtcttccaactgctctcataagattagcaatctcaagaactctagccactttagttcctctttttgcct |
347 |
Q |
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|||| ||||| ||| |||| | ||||| ||||||||| |||||||||| || |||||||||||||| || | | ||||||||||||||| |||| |
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| T |
21427486 |
cttaaaagaaggatcttttggaaggagctcttccaacaactctcataaggttggcaatctcaagaacccttgaaattttagttcctcttttagcct |
21427581 |
T |
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