View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_low_16 (Length: 329)
Name: NF12865_low_16
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 51 - 313
Target Start/End: Original strand, 31173171 - 31173448
Alignment:
| Q |
51 |
tagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttgatttcaattcattcttttt |
150 |
Q |
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| T |
31173171 |
tagcaaaggaatccaaacctaagaaagtttccaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgtttcgatttcaattcattcttttt |
31173270 |
T |
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| Q |
151 |
---------------gttacaaattatagtttcaattggatctaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
235 |
Q |
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| T |
31173271 |
ctaattcttcgttttgttacaaattatagtttcaattgaatgtaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
31173370 |
T |
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| Q |
236 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattg |
313 |
Q |
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| T |
31173371 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattg |
31173448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 51 - 313
Target Start/End: Complemental strand, 31227283 - 31227006
Alignment:
| Q |
51 |
tagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttgatttcaattcattcttttt |
150 |
Q |
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| T |
31227283 |
tagcaaaggaatccaaacctaagaaagtttccaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgtttcgatttcaattcattcttttt |
31227184 |
T |
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| Q |
151 |
---------------gttacaaattatagtttcaattggatctaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
235 |
Q |
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| T |
31227183 |
ctaattcttcgttttgttacaaattatagtttcaattgaatgtaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
31227084 |
T |
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| Q |
236 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattg |
313 |
Q |
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| T |
31227083 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattg |
31227006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 194 - 313
Target Start/End: Complemental strand, 31232371 - 31232252
Alignment:
| Q |
194 |
cagatgattaaggatgcaattgtgtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttcctt |
293 |
Q |
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|||||||||||||||||||||||| | |||| ||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31232371 |
cagatgattaaggatgcaattgtgactttgaaagagagaactggttcaagtcaatttgcaattgcgaaattcattgaagagaaacacaaacagcttcctt |
31232272 |
T |
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| Q |
294 |
caaatttcaagaagttattg |
313 |
Q |
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| T |
31232271 |
caaatttcaagaagctattg |
31232252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 51 - 313
Target Start/End: Original strand, 32797854 - 32798143
Alignment:
| Q |
51 |
tagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttgatt-tcaattca------- |
142 |
Q |
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|||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |
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| T |
32797854 |
tagcgaaggaatccaaacctaagaaagcttccaaaccacgaaaccctgcttctcatcctacttacgaagaggttcgtttcaattctcaattcactccttt |
32797953 |
T |
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| Q |
143 |
----ttctt---tttgttacaaattatagtttcaattggatctaattt-----------gaacgaattgcagatgattaaggatgcaattgtgtcgctga |
224 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| || |||| |
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| T |
32797954 |
ctaattcttagttttgttacgaattatagtttcaattggatctaattttttattgatttgaacaatttgcagatgattaaggatgcaattgtatctctga |
32798053 |
T |
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| Q |
225 |
aggagaggactggttcaagccaatacgcaattgcgaaattc-atcgaagagaaacacaaacagcttccttcaaatttcaagaagttattg |
313 |
Q |
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|||| ||||| |||||||||||||| || ||||| |||||| || ||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
32798054 |
aggataggacgggttcaagccaatatgcgattgcaaaattcaattgaagagaaacacaaacagcttccatcaaatttcaagaaattattg |
32798143 |
T |
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