View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12865_low_18 (Length: 307)
Name: NF12865_low_18
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 48695019 - 48695299
Alignment:
| Q |
10 |
aagcaaaggaaacagaactgaataaaaccattcacattacaggttgattgtttgattcaatcattaagatctccctttatctaattagctagtttttgca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | |
|
|
| T |
48695019 |
aagcaaaggaaacagaactgaataaaaccattcacattacaggttgattgtttgattcaatcattaaaatctccctttatctaattaattagtttttgta |
48695118 |
T |
|
| Q |
110 |
gcaataaagcttattatgtttccctcatctttttaatagaggaaactatgagagcaaagcaagtgctggcaacaatgtcacatgagataagatctccact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695119 |
gcaataaagcttattatgtttccctcatctttttaatagaggaaactatgagagcaaagcaagtgctggcaacaatgtcacatgagataagatctccact |
48695218 |
T |
|
| Q |
210 |
ttctggtgttgttagcatggctgaaattctttccaccacaaaacttgataaggagcaaagacagcttttggatgtcatgtt |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695219 |
ttctggtgttgttagcatggctgaaattctttccaccacaaaacttgataaggagcaaagacagcttttggatgtcatgtt |
48695299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 290
Target Start/End: Complemental strand, 3455251 - 3455104
Alignment:
| Q |
143 |
taatagaggaaactatgagagcaaagcaagtgctggcaacaatgtcacatgagataagatctccactttctggtgttgttagcatggctgaaattctttc |
242 |
Q |
| |
|
|||||||||| || ||||||||||| ||| || ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| | |
|
|
| T |
3455251 |
taatagaggagacaatgagagcaaaacaaatgttggcaacaatgtctcatgagataagatcaccgctttctggtgttgttagcatggctgaaattcttac |
3455152 |
T |
|
| Q |
243 |
caccacaaaacttgataaggagcaaagacagcttttggatgtcatgtt |
290 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3455151 |
gacaacaaaacttgataaagagcaaagacagcttttggatgtcatgtt |
3455104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 143 - 288
Target Start/End: Complemental strand, 3479616 - 3479471
Alignment:
| Q |
143 |
taatagaggaaactatgagagcaaagcaagtgctggcaacaatgtcacatgagataagatctccactttctggtgttgttagcatggctgaaattctttc |
242 |
Q |
| |
|
|||||||||| || ||||||||||| ||| || ||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||| | |
|
|
| T |
3479616 |
taatagaggagacaatgagagcaaaacaaatgttggcaacaatgtctcatgagataagatcaccactttctgatgttgttagcatggccaaaattcttac |
3479517 |
T |
|
| Q |
243 |
caccacaaaacttgataaggagcaaagacagcttttggatgtcatg |
288 |
Q |
| |
|
|| ||||||||||| | |||||||||||||| || |||| |||| |
|
|
| T |
3479516 |
tacaacaaaacttgacagagagcaaagacagctcttagatgccatg |
3479471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 3455394 - 3455350
Alignment:
| Q |
10 |
aagcaaaggaaacagaactgaataaaaccattcacattacaggtt |
54 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3455394 |
aagcaaaggaaacagaacttaataaaaccattcacattacaggtt |
3455350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 3479759 - 3479715
Alignment:
| Q |
10 |
aagcaaaggaaacagaactgaataaaaccattcacattacaggtt |
54 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3479759 |
aagcaaaggaaacagaacttaataaaaccattcacattacaggtt |
3479715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University