View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_low_19 (Length: 305)
Name: NF12865_low_19
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_19 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 26609772 - 26610049
Alignment:
| Q |
18 |
gatacgatggagatggatctatacagctcacaaaagtcttcagatttgttttcatcgtggctgcctaatcctaccttgaacatgacatcttatcatgcca |
117 |
Q |
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| T |
26609772 |
gatacgatggagatggatctatacagctcacaaaagtcttcagatttgttttcatcgtggctgcctaatcctaccttgaacatgacatcttatcatgcca |
26609871 |
T |
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| Q |
118 |
caattaacaactcaagtttcatatagaaaataaataagtgaattaactataatcaacgagtgtgtgttgaaggtaggtcttggatatgtggtgagtgcat |
217 |
Q |
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| T |
26609872 |
caattaacaactcaagtttcatatagaaaataaataagtgaattatctataatcaatgagtgtgtgttgaaggtaggtcttggatatgtggggagtgcat |
26609971 |
T |
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| Q |
218 |
tcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctg |
295 |
Q |
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| T |
26609972 |
tcgtgtctttgttggtgtttattttgtgtgttctgtttacatacgacatctttgtagtctctgatttaccgatctctg |
26610049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 8987700 - 8987585
Alignment:
| Q |
181 |
gtgttgaaggtaggtcttggatatgtggtgagtgca-ttcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctct |
279 |
Q |
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| T |
8987700 |
gtgttgaaggtaggtcttaggtgggtgctgtgtgtatttcgtgtctttattggtgtttattttgggtgttccgcatatatatggtgccttcgtagtctct |
8987601 |
T |
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| Q |
280 |
gatttaccgatctctg |
295 |
Q |
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| T |
8987600 |
gatttaccaatctctg |
8987585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 21301 - 21231
Alignment:
| Q |
216 |
attcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttac |
286 |
Q |
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| T |
21301 |
attcgtgtctttattgatgttcattttgggtgttccgcctatatacgacacctttgtagtctctgatttac |
21231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 33283733 - 33283620
Alignment:
| Q |
181 |
gtgttgaaggtaggtcttggatatgtggtgagtgcattcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctg |
280 |
Q |
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| T |
33283733 |
gtgttgaaattaggtcttggataggtgatgtaggtattcgtgtttttatcggtgtttattttggatgttccgtctatatacaacgtctttataatctctg |
33283634 |
T |
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| Q |
281 |
atttaccgatctct |
294 |
Q |
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| T |
33283633 |
atttaccgatctct |
33283620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 21029981 - 21030047
Alignment:
| Q |
227 |
tattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctc |
293 |
Q |
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| T |
21029981 |
tattggtgtttattttgggtgttccgcctacatacggcacctttgtagtctttgatttaccggtctc |
21030047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 5746925 - 5747022
Alignment:
| Q |
181 |
gtgttgaaggtaggtcttggatatgtggtgagtgca-ttcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtct |
277 |
Q |
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| T |
5746925 |
gtgttgaaggtaggtcttaggtaggtgatgtgtgtaattcgtgtctttattgatgttcattttaggtgttccgcctatatacgacgcctttgtagtct |
5747022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 43344593 - 43344519
Alignment:
| Q |
220 |
gtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctct |
294 |
Q |
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| T |
43344593 |
gtgtctttattggtgtttattttgagttttccgcctatatacggcacatttgtagtctctggtttaccggtctct |
43344519 |
T |
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