View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_low_2 (Length: 557)
Name: NF12865_low_2
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 20 - 549
Target Start/End: Complemental strand, 28119271 - 28118743
Alignment:
| Q |
20 |
acagctgcaaagtgtgttgttccatgctccgaatcgaagtatggagcaaaaacacacccttgcacacacttcctcctcaaaaacttgcaagccccacaag |
119 |
Q |
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| T |
28119271 |
acagctgcaaagtgtgttgttccatgctccgaatcgaagtatggagcaaaaacacacccttgcacacacttcctcctcaaaaacttgcaagccccacaag |
28119172 |
T |
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| Q |
120 |
ggcttccactgcttccgccgccaccactgcttccgctgccactagagtttagactcatctctaaagggtaattaatatttttgtttttgttttaatgtct |
219 |
Q |
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| T |
28119171 |
ggcttccactgcttccgccgccaccaccgcttccgctgccactagagtttagactcatctctaaagggtaattaatatttttgtttttgttttaatgtct |
28119072 |
T |
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| Q |
220 |
atagctatggnnnnnnnnnagatgtaataattaggtttnnnnnnnctagggtttgattaaatttgtgagagtcatatgatctatgaaggaaaaattgaaa |
319 |
Q |
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| T |
28119071 |
atagctatggtttttttt-agatgtaataattaggtttaaaaaaactagggtttgattaaatttgtgagagtcatatgatctatgaaggaaaaattgaaa |
28118973 |
T |
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| Q |
320 |
ggaaagaattaaggtagtgtttgtaggaatatttggtggggttatatagctagtgatttaatgaggaaatttaagaaaaattctttaaagccacgcgaag |
419 |
Q |
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| T |
28118972 |
ggaaagaattaaggtagtgtttgtaggaatatttggtggggttatatagctagtgatttaatgaggaaatttaagaaaaattctttaaagccacgcgaag |
28118873 |
T |
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| Q |
420 |
gagcaaaggcttaacctaaacatttttgcttcttgcgtgaagaaaaacataagataaaaatttatataagattggttattggttatatataccttaaatg |
519 |
Q |
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| T |
28118872 |
gagcaaaggcttaacctaaacatttttgcttcttgcgtgaagaaaaacataagataaaaatttatataagattggttattggttatatataccttaaatg |
28118773 |
T |
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| Q |
520 |
attcacttttcctcttttgtccttcttctc |
549 |
Q |
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| T |
28118772 |
attcacttttcctcttttgtccttcttctc |
28118743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 13270669 - 13270747
Alignment:
| Q |
44 |
tgctccgaatcgaagtatggagcaaaaacacacccttgcacacacttcctcctcaaaaacttgcaagccccacaagggc |
122 |
Q |
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| T |
13270669 |
tgctccgaatcgaagtaaggcgcaaaaatacatcccgggatacacttccttctcaaaaacttgcacgcgccacaagggc |
13270747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 13286827 - 13286790
Alignment:
| Q |
83 |
acacacttcctcctcaaaaacttgcaagccccacaagg |
120 |
Q |
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| T |
13286827 |
acacactttctcctcaaaaacttgcaagcaccacaagg |
13286790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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