View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12865_low_27 (Length: 242)

Name: NF12865_low_27
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12865_low_27
NF12865_low_27
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-223)||(1857-2080)
[»] scaffold0013 (1 HSPs)
scaffold0013 (52-188)||(243269-243406)
[»] chr2 (6 HSPs)
chr2 (1-77)||(27977248-27977325)
chr2 (1-77)||(28063776-28063853)
chr2 (1-57)||(28497289-28497347)
chr2 (1-75)||(22403729-22403805)
chr2 (1-44)||(29046658-29046702)
chr2 (1-57)||(16131178-16131236)
[»] chr8 (4 HSPs)
chr8 (1-57)||(9818275-9818332)
chr8 (1-57)||(21231946-21232003)
chr8 (1-56)||(42077569-42077625)
chr8 (48-84)||(26161635-26161671)
[»] chr7 (5 HSPs)
chr7 (1-57)||(10530238-10530295)
chr7 (1-57)||(9745124-9745181)
chr7 (1-57)||(13167883-13167941)
chr7 (1-57)||(29587574-29587632)
chr7 (1-56)||(8311731-8311788)
[»] chr1 (1 HSPs)
chr1 (3-54)||(31654674-31654726)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-50)||(107863-107913)
[»] chr4 (3 HSPs)
chr4 (1-57)||(10344742-10344799)
chr4 (1-75)||(41943115-41943190)
chr4 (1-57)||(3295294-3295352)
[»] chr3 (3 HSPs)
chr3 (1-79)||(52641429-52641509)
chr3 (1-57)||(15990267-15990325)
chr3 (13-78)||(29453623-29453689)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-57)||(2600-2658)


Alignment Details
Target: scaffold0022 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2080 - 1857
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaacatggtcaagactagagcccttacctcaaaagctttccttcctaatcgaacaactctaaatcaaggca 99  Q
    ||||||||||||||||||  ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2080 ttcaacatcataatctattgttttcatttaaatatggtcaagactagagcccttacctcaaaagcttttcttcctaatcgaacaactctaaatcaaggca 1981  T
Q  100 taccgattattgctccgtgaaagctttccttcctaacatgcactctaagccacatagtgttctcaccggaccaagaaacaatcttaagatttcacacaaa 199  Q
     |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1980 caccgatcattgctccgtgaaagctttccttcgtaacttgcactctaagccacatagtgttctcaccggaccaagaaacaatcttaagatttcacacaaa 1881  T
Q  200 atagtgtgcacgtagccttaggaa 223  Q
    ||||||||||||||||||||||||    
T  1880 atagtgtgcacgtagccttaggaa 1857  T

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Target: scaffold0013 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 243269 - 243406
Alignment:
Q  52 ttacctcaaaagctttccttcctaatcgaacaactctaaatcaaggcataccgattattgctccgtgaaagctttccttcctaacatgcactctaagcca 151  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||||||||||||| ||||||||||    
T  243269 ttacctcgaaagctttccttcctaatcgaacaactctaaatcaaggcacaccgatctttgctccatgaaagctttccttcctaacatgcgctctaagcca 243368  T
Q  152 catag-tgttctcaccggaccaagaaacaatcttaaga 188  Q
    |||||  |||||||| ||| ||| ||||||||||||||    
T  243369 catagcggttctcacaggaacaacaaacaatcttaaga 243406  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 27977248 - 27977325
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaacatggtcaagactagagcccttacctcaaaagctttccttcctaat 77  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | | |||||||||||||||    
T  27977248 ttcaacatcataatctatcattttcatttaaacatggttaagactagagcccttaccttagacgctttccttcctaat 27977325  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28063776 - 28063853
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaacatggtcaagactagagcccttacctcaaaagctttccttcctaat 77  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | | |||||||||||||||    
T  28063776 ttcaacatcataatctatcattttcatttaaacatggttaagactagagcccttaccttagacgctttccttcctaat 28063853  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 28497289 - 28497347
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaa-catggtcaagactagagcccttacct 57  Q
    ||||||||||||| ||||||||| || ||||| ||||||||||||||||||||||||||    
T  28497289 ttcaacatcataacctatcattttcaattaaatcatggtcaagactagagcccttacct 28497347  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 22403805 - 22403729
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaa-catggtcaagactagagcccttacctcaaaagctttccttccta 75  Q
    |||||||||||||||||| |||| || ||||| |||||| |||||||||||||||||||| | | |||| |||||||    
T  22403805 ttcaacatcataatctattattttcagttaaatcatggtaaagactagagcccttacctcgagatcttttcttccta 22403729  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29046658 - 29046702
Alignment:
Q  1 ttcaacatcataatctatca-tttcatttaaacatggtcaagact 44  Q
    |||||||||||||||||||| |||||||||||||||||| |||||    
T  29046658 ttcaacatcataatctatcattttcatttaaacatggtctagact 29046702  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 16131178 - 16131236
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaac-atggtcaagactagagcccttacct 57  Q
    |||| |||||||| ||||||||| || |||||| |||||||||||||||||||||||||    
T  16131178 ttcagcatcataacctatcattttcaattaaaccatggtcaagactagagcccttacct 16131236  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9818275 - 9818332
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaacatggtcaagactagagcccttacct 57  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9818275 ttcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttacct 9818332  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21231946 - 21232003
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaacatggtcaagactagagcccttacct 57  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||    
T  21231946 ttcaacatcataatctatcattttcatttaaacacggtcaagactagagccattacct 21232003  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42077569 - 42077625
Alignment:
Q  1 ttcaacatcataatctatcatt-tcatttaaacatggtcaagactagagcccttacc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||    
T  42077569 ttcaacatcataatctatcattctcatttaaacatggtcaagactagaacccctacc 42077625  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 26161671 - 26161635
Alignment:
Q  48 gcccttacctcaaaagctttccttcctaatcgaacaa 84  Q
    |||||||||||||||||||||||||||||||||||||    
T  26161671 gcccttacctcaaaagctttccttcctaatcgaacaa 26161635  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10530238 - 10530295
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaacatggtcaagactagagcccttacct 57  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10530238 ttcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttacct 10530295  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9745181 - 9745124
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaacatggtcaagactagagcccttacct 57  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  9745181 ttcaacatcataatctatcattttcctttaaacatggtcaagactagagcccttacct 9745124  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13167941 - 13167883
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaa-catggtcaagactagagcccttacct 57  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  13167941 ttcaacatcataatctatcattttcacttaaatcatggtcaagactagagcccttacct 13167883  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29587632 - 29587574
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaa-catggtcaagactagagcccttacct 57  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||    
T  29587632 ttcaacatcataatctatcattttcattcaaatcatggtcaagactagagcccttacct 29587574  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 8311788 - 8311731
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaa-catggtcaagactagagcccttacc 56  Q
    |||||||||||||||||| |||| || ||||| |||||||||||||||||| ||||||    
T  8311788 ttcaacatcataatctattattttcagttaaatcatggtcaagactagagcacttacc 8311731  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 31654674 - 31654726
Alignment:
Q  3 caacatcataatctatcattt-catttaaacatggtcaagactagagccctta 54  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31654674 caacatcataatctatcattttcatttaaacatggtcaagactagagccctta 31654726  T

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Target: scaffold0016 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 107913 - 107863
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaacatggtcaagactagagcc 50  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  107913 ttcaacatcataatctatcattttcatttaaacatggtcaagactagagcc 107863  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10344742 - 10344799
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaacatggtcaagactagagcccttacct 57  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||    
T  10344742 ttcaacatcataatctatcattttcatttaaaaatggtcaagactagaacccttacct 10344799  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41943115 - 41943190
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaacatggtcaagactagagcccttacctcaaaagctttccttccta 75  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||| || ||| | | ||| |||||||||    
T  41943115 ttcaacaacataatctatcattttcatttaaacatggtcaagactagagcctttgccttagatgctctccttccta 41943190  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3295352 - 3295294
Alignment:
Q  1 ttcaacatcataatctatca-tttcatttaaa-catggtcaagactagagcccttacct 57  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||    
T  3295352 ttcaacatcataatctatcagtttcacttaaatcatggtcaagactagagctcttacct 3295294  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 52641429 - 52641509
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaa-catggtcaagactagagcccttacctcaaaagctttccttcctaatcg 79  Q
    ||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||| | ||||||  |||||||||||    
T  52641429 ttcaacatcataatctatcattttcaattaaatcatggtcaaaactagagcccttaccttataagcttcgcttcctaatcg 52641509  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15990267 - 15990325
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaa-catggtcaagactagagcccttacct 57  Q
    |||||| |||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  15990267 ttcaacgtcataatctatcattttcagttaaatcatggtcaagactagagcccttacct 15990325  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 29453689 - 29453623
Alignment:
Q  13 atctatcattt-catttaaacatggtcaagactagagcccttacctcaaaagctttccttcctaatc 78  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||||||   |||||| | |||||||||    
T  29453689 atctatcattttcatttaaacatggtcaaaactagagtccttaccttgtaagcttccattcctaatc 29453623  T

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Target: scaffold0259 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2600 - 2658
Alignment:
Q  1 ttcaacatcataatctatcattt-catttaaa-catggtcaagactagagcccttacct 57  Q
    ||||||||||||| ||||||||| || ||||| ||||||||| ||||||||||||||||    
T  2600 ttcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttacct 2658  T

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