View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_low_29 (Length: 238)
Name: NF12865_low_29
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 24137016 - 24137237
Alignment:
| Q |
1 |
ctcgcttcatccaacattccactatgcacatatgcaaacaccattgttgttcacgtgaaaacaccccgcaccggagactcctcaaacaatctcccagcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24137016 |
ctcgcttcatccaacattccactatgcacatatgcaaacaccattgttgtccacgtgaaaacaccctgcaccggagactcctcaaacaatctcccagcta |
24137115 |
T |
|
| Q |
101 |
gaaacaaatctccatccgggccataaccgaaaatcatggtattccaagaaattacatccctaacaagcacatgatcaaaaagtctaatagcatcacccaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24137116 |
gaaacaaatctccatctgggccataaccgaaaattatggtattccaagaaattacatccctaacaagcacatgatcaaaaagtctaatagcatcacccaa |
24137215 |
T |
|
| Q |
201 |
catcttccttttacatacctac |
222 |
Q |
| |
|
||||||||| |||||||||||| |
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| T |
24137216 |
catcttcctcttacatacctac |
24137237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 24134713 - 24134913
Alignment:
| Q |
9 |
atccaacattccactatgcacatatgcaaacaccattgttgttcacgtgaaaacaccccgcaccggagactcctcaaacaatctcccagctagaaacaaa |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||||||||||||||| |||| | |||||| |
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| T |
24134713 |
atccaacattccactctgcacatatgcaaacatcattgttgtccacctgaaaacatcccgcaccggagactcctcaaacaatctcctagcttgtaacaaa |
24134812 |
T |
|
| Q |
109 |
tctccatccgggccataaccgaaaatcatggtattccaagaaattacatccctaacaagcacatgatcaaaaagtctaatagcatcacccaacatcttcc |
208 |
Q |
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| ||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||| |
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| T |
24134813 |
tatccattcggtgcatatccgaaaatcagggtattccaagaaattacatccctaacaagcatatgatcaaaaaatctcctagcatcacccaacatcctcc |
24134912 |
T |
|
| Q |
209 |
t |
209 |
Q |
| |
|
| |
|
|
| T |
24134913 |
t |
24134913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 45148884 - 45148676
Alignment:
| Q |
1 |
ctcgcttcatccaacattccactatgcacatatgcaaacaccattgttgttcacgtgaaaacaccccgcaccggagactcctcaaacaatctcccagcta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| |||| ||| |
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| T |
45148884 |
ctcgcttcatccaacattccactctgcacatatgcaaacaccattgctgtccacgtgaaaacatcccgcaccggagactcctcaaacaacctcctggctt |
45148785 |
T |
|
| Q |
101 |
gaaacaaatctccatccgggccataaccgaaaatcatggtattccaagaaattacatccctaacaagcacatgatcaaaaagtctaatagcatcacccaa |
200 |
Q |
| |
|
| ||||||||||||||| || |||||||| ||||||||||||||||||| ||| ||| ||||||| ||| ||||||||||||||| ||||||||||||| |
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|
| T |
45148784 |
gtaacaaatctccatcccgggcataaccggaaatcatggtattccaagagattgcattcctaacaggcatatgatcaaaaagtctcctagcatcacccaa |
45148685 |
T |
|
| Q |
201 |
catcttcct |
209 |
Q |
| |
|
||||||||| |
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|
| T |
45148684 |
catcttcct |
45148676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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