View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12865_low_3 (Length: 530)

Name: NF12865_low_3
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12865_low_3
NF12865_low_3
[»] chr3 (13 HSPs)
chr3 (153-525)||(34525074-34525452)
chr3 (179-525)||(27631766-27632118)
chr3 (179-525)||(34515800-34516160)
chr3 (19-199)||(34524912-34525092)
chr3 (189-450)||(27615809-27616058)
chr3 (339-455)||(34524736-34524848)
chr3 (96-168)||(27631711-27631783)
chr3 (189-250)||(34504896-34504958)
chr3 (19-93)||(34515707-34515781)
chr3 (96-147)||(34515031-34515082)
chr3 (114-168)||(34515763-34515817)
chr3 (239-280)||(34524579-34524620)
chr3 (189-226)||(34486519-34486556)
[»] chr4 (1 HSPs)
chr4 (97-144)||(1070080-1070127)


Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 153 - 525
Target Start/End: Original strand, 34525074 - 34525452
Alignment:
Q  153 tttatatgactcccttaatagggaaaagtttatattactcccttaatcaaaattaagatataattttgaaaaaataactagcaagaatgaacaaatagga 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34525074 tttatatgactcccttaatagggaaaagtttatattactcccttaatcaaaattaagatataattttgaaaaaataactagcaagaatgaacaaatagga 34525173  T
Q  253 aatatctcgttttagtcctgcataaaattatctgagaagctaatttcagtatctcactcatg-nnnnnnngtcatttagtacctcaaaagtgaatatttt 351  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  34525174 aatatctcgttttagtcctgcataaa---atctgagaagctaatttcagtatctcactcatgaagaaaaagtcatttagtacctcaaaagtgaatatttt 34525270  T
Q  352 tctgttggtattgcaacggaaaaagaaaaacacaatgcctcattttacaagcatcatcaaaagtatctgaagatataattaataaagcagttcctcgcaa 451  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34525271 tctgttggtattgcaacagaaaaagaaaaacacaatgcctcattttacaagcatcatcaaaagtatctgaagatataattaataaagcagttcctcgcaa 34525370  T
Q  452 atgcgtctat--------ctattctaagaacaaagttgacataagcaattcctgagaaaaaatagctctgtttcttctctct 525  Q
    ||||||||||        ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  34525371 atgcgtctatctattctactattctaagaacaaagttgacataagcaattcctgagaaaaagtagctctctttcttctctct 34525452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 179 - 525
Target Start/End: Original strand, 27631766 - 27632118
Alignment:
Q  179 agtttatattactcccttaatcaaaattaagatataattttgaaaaaataa-ctagcaagaatgaacaaataggaaatatctcgttttagtcctgcataa 277  Q
    ||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27631766 agtttatatgactcccttgatcaaagttaagatataattttgaaaaaataaactagcaagaatgaacaaataggaaatatctcgttttagtcctgcataa 27631865  T
Q  278 aattatctgagaagctaatttcagtatctcactcat-gnnnnnnngtcatttagtacctcaaaagtgaatatttttctgttggtattgcaacggaaaaag 376  Q
    |   |||||||||||| ||||||||||||||| |||         ||||||||||| |||||||||||||||||||||||||||||||||||  | ||||    
T  27631866 a---atctgagaagctgatttcagtatctcacacataaagaaaaagtcatttagtaactcaaaagtgaatatttttctgttggtattgcaac--agaaag 27631960  T
Q  377 aaaaacacaatgcctcattttacaagcatc---------atcaaaagtatctgaagatataattaataaagcagttcctcgcaaatgcgtctatctattc 467  Q
    |||||||||||||||| |||||||||||||         ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27631961 aaaaacacaatgcctctttttacaagcatcgtcaaaactatcaaaactatctgaagatataattaataaagcagttcctcgcaaatgcgcctatctattc 27632060  T
Q  468 taagaacaaagttgacataagcaattcctgagaaaaaatagctctgtttcttctctct 525  Q
    |||| ||||||||||||||||||||||||||||||||  ||| ||||| |||||||||    
T  27632061 taaggacaaagttgacataagcaattcctgagaaaaatcagccctgttacttctctct 27632118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 179 - 525
Target Start/End: Original strand, 34515800 - 34516160
Alignment:
Q  179 agtttatattactcccttaatcaaaattaagatataattttgaaaaaataa-ctagcaagaatgaacaaataggaaatatctcgttttagtcctgcataa 277  Q
    ||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34515800 agtttatatgactcccttgatcaaagttaagatataattttgaaaaaataaactagcaagaatgaacaaataggaaatatctcgtttcagtcctgcataa 34515899  T
Q  278 aattatctgagaagctaatttcagtatctcactcat-gnnnnnnngtcatttagtacctcaaaagtgaatatttttctgttggtattgcaacggaaaaag 376  Q
    |   |||||||||||||||||||||||||||| |||         ||||||||||| ||||||||| |||||||||||||||||||||||||  | ||||    
T  34515900 a---atctgagaagctaatttcagtatctcacacataaagaaaaagtcatttagtaactcaaaagttaatatttttctgttggtattgcaac--agaaag 34515994  T
Q  377 aaaaacacaatgcctcattttacaagcatc---------atcaaaagtatctgaagatataattaataaagcagttcctcgcaaatgcgtctat------ 461  Q
    |||||| ||||||||| |||||||||||||         ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||          
T  34515995 aaaaacgcaatgcctctttttacaagcatcgtcaaaactatcaaaactatctgaagatataattaataaagcagttcctcgcaaatgcgcctatctattc 34516094  T
Q  462 --ctattctaagaacaaagttgacataagcaattcctgagaaaaaatagctctgtttcttctctct 525  Q
      |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34516095 tactattctaaggacaaagttgacataagcaattcctgagaaaaagtagctctgtttcttctctct 34516160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 34524912 - 34525092
Alignment:
Q  19 tttcctacaagtcaaaaatttactctgctgtaacctttaaaaagtgcttttaaagaatttgatgaaaaattgagtattttatggtagaacaaagtatttg 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34524912 tttcctacaagtgaaaaatttactctgctgtaacctttaaaaagtgcttttaaagaatttgatgaaaaattgagtattttatggtagaacaaagtatttg 34525011  T
Q  119 atgaaaaattgtgtagaatcaaatcagctaataatttatatgactcccttaatagggaaaagtttatattactcccttaat 199  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  34525012 atgaaaaattgtgtagaatcaaatcagctaatagtttatatgactcccttaatagggaaaagtttatatgactcccttaat 34525092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 189 - 450
Target Start/End: Original strand, 27615809 - 27616058
Alignment:
Q  189 actcccttaatcaaaattaagatataattttgaaaaaataa-ctagcaagaatgaacaaataggaaatatctcgttttagtcctgcataaaattatctga 287  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||   ||||||    
T  27615809 actcccttaatcaaagttaagatataattttgaaaaaataaactagcaagaatgaacaaataggaaatatctcattttagtccttcataaa---atctga 27615905  T
Q  288 gaagctaatttcagtatctcactcatgnnnnnnngtcatttagtacctcaaaagtgaatatttttctgttggtattgcaacgga--------aaaagaaa 379  Q
    |||||||||||| ||||||||| ||||              ||      |||||| ||||||||||||||||||||||||| ||        |||| |||    
T  27615906 gaagctaatttctgtatctcacacatga-------------ag-----aaaaagtaaatatttttctgttggtattgcaacagaaagaaaagaaaaaaaa 27615987  T
Q  380 aacacaatgcctcattttacaagcatcatcaaaagtatctgaagatataattaataaagcagttcctcgca 450  Q
    ||| ||||||||| ||||||||||||| ||| || ||||| ||||||||||||||||||||||| ||||||    
T  27615988 aacgcaatgcctctttttacaagcatcgtcacaactatctaaagatataattaataaagcagtttctcgca 27616058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 339 - 455
Target Start/End: Original strand, 34524736 - 34524848
Alignment:
Q  339 aagtgaatatttttctgttggtattgcaacggaaaaagaaaaacacaatgcctcattttacaagcatcatcaaaagtatctgaagatataattaataaag 438  Q
    |||||||||||||||||||||||||||||| ||||||    ||| ||||||||| ||||||| |||||||||||  |||||||||||||||||||||| |    
T  34524736 aagtgaatatttttctgttggtattgcaacagaaaaa----aacgcaatgcctctttttacatgcatcatcaaagttatctgaagatataattaataacg 34524831  T
Q  439 cagttcctcgcaaatgc 455  Q
    |||||||||||||||||    
T  34524832 cagttcctcgcaaatgc 34524848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 27631711 - 27631783
Alignment:
Q  96 tttatggtagaacaaagtatttgatgaaaaattgtgtagaatcaaatcagctaataatttatatgactccctt 168  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||    
T  27631711 tttatggtagaacaaagtatttgatgaaaaattgagtggaatcaaatcagctaatagtttatatgactccctt 27631783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 34504896 - 34504958
Alignment:
Q  189 actcccttaatcaaaattaagatataattttgaaaaaat-aactagcaagaatgaacaaatag 250  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||    
T  34504896 actcccttaatcaaagttaagatataattttgaaaaaataaactagcgagaatgaacaaatag 34504958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 34515707 - 34515781
Alignment:
Q  19 tttcctacaagtcaaaaatttactctgctgtaacctttaaaaagtgcttttaaagaatttgatgaaaaattgagt 93  Q
    ||||||| |||| |||||||| ||||| |||||||||||||||||| ||||| |||||||| |||||||||||||    
T  34515707 tttcctagaagtaaaaaatttgctctgttgtaacctttaaaaagtgattttatagaatttgttgaaaaattgagt 34515781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 34515031 - 34515082
Alignment:
Q  96 tttatggtagaacaaagtatttgatgaaaaattgtgtagaatcaaatcagct 147  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  34515031 tttatggtagaacaaagtatttgatgaaaaattgagtggaatcaaatcagct 34515082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 34515763 - 34515817
Alignment:
Q  114 atttgatgaaaaattgtgtagaatcaaatcagctaataatttatatgactccctt 168  Q
    ||||| |||||||||| || |||||||||||||||||| ||||||||||||||||    
T  34515763 atttgttgaaaaattgagtggaatcaaatcagctaatagtttatatgactccctt 34515817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 34524579 - 34524620
Alignment:
Q  239 atgaacaaataggaaatatctcgttttagtcctgcataaaat 280  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  34524579 atgaacaaataggaaatatctccttttagtcctacataaaat 34524620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 34486519 - 34486556
Alignment:
Q  189 actcccttaatcaaaattaagatataattttgaaaaaa 226  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  34486519 actcccttaatcaaagttaagatataattttggaaaaa 34486556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 1070127 - 1070080
Alignment:
Q  97 ttatggtagaacaaagtatttgatgaaaaattgtgtagaatcaaatca 144  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||    
T  1070127 ttatggtagaacatagtttttgatgaaaaattgtgtggaatcaaatca 1070080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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