View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12865_low_30 (Length: 237)

Name: NF12865_low_30
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12865_low_30
NF12865_low_30
[»] chr3 (8 HSPs)
chr3 (1-224)||(23032493-23032712)
chr3 (17-224)||(23016857-23017060)
chr3 (17-224)||(23038836-23039039)
chr3 (59-224)||(23036007-23036168)
chr3 (59-224)||(23145757-23145918)
chr3 (59-224)||(23148595-23148756)
chr3 (63-183)||(23024113-23024233)
chr3 (59-224)||(23139883-23140044)
[»] scaffold0554 (1 HSPs)
scaffold0554 (24-224)||(6756-6952)
[»] chr6 (1 HSPs)
chr6 (59-224)||(21779650-21779811)
[»] scaffold0059 (1 HSPs)
scaffold0059 (89-183)||(62020-62114)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 23032493 - 23032712
Alignment:
Q  1 cattttcttcgtgcacagctcatgtgacattcaaaggttgatgaacaagtggaatcagtaaaagatcatcttttcttctcattgcgattccaaattcctc 100  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23032493 cattttcttcgtgcgaagctcatgtgacattcaaaggttgatgaataagtggaatcagtaaaagatcatcttttcttctcattgcgattccaaattcctc 23032592  T
Q  101 agtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatacaacaacatcgcaagggccagctcaatatatatttctcaaacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    ||||||||||||||    
T  23032593 agtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatacaacaacatcgcgagggccagctca----atatttctcaaacc 23032688  T
Q  201 aaatgtactccctgggcatattct 224  Q
    ||||||||||||||||||||||||    
T  23032689 aaatgtactccctgggcatattct 23032712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 23016857 - 23017060
Alignment:
Q  17 agctcatgtgacattcaaaggttgatgaacaagtggaatcagtaaaagatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagttct 116  Q
    ||||||| ||||||||||||| |||| |||||  || |  |||||||| ||||||||||| ||||||| || |||||||| |||||||||||| |||||     
T  23016857 agctcatctgacattcaaaggatgataaacaaaaggcaatagtaaaaggtcatcttttctcctcattgtgactccaaattgctcagtcatgtccagttcg 23016956  T
Q  117 gcacttctgattccatcaggaagcgtccagtcaaaatgatacaacaacatcgcaagggccagctcaatatatatttctcaaaccaaatgtactccctggg 216  Q
     ||| | |||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||    | |||||||||||| ||||||||||| |||    
T  23016957 tcacatttgattccaccgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactca----acatttctcaaaccgaatgtactcccaggg 23017052  T
Q  217 catattct 224  Q
    ||||||||    
T  23017053 catattct 23017060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 23038836 - 23039039
Alignment:
Q  17 agctcatgtgacattcaaaggttgatgaacaagtggaatcagtaaaagatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagttct 116  Q
    ||||||| |||| | |||||| |||| |||||  | || || |||||||||||||||||||||||||| |  ||| ||||| |||||||| || |  |||    
T  23038836 agctcatatgacttacaaaggatgataaacaaaagaaaacaataaaagatcatcttttcttctcattgtggctccgaattcatcagtcatatccaagtct 23038935  T
Q  117 gcacttctgattccatcaggaagcgtccagtcaaaatgatacaacaacatcgcaagggccagctcaatatatatttctcaaaccaaatgtactccctggg 216  Q
     ||||||||||||||   |||||| ||||||||||||||||||||||||| ||||||||||||||||||     |||||||||||||||| |||||||||    
T  23038936 tcacttctgattccacttggaagcttccagtcaaaatgatacaacaacattgcaagggccagctcaatac----ttctcaaaccaaatgtgctccctggg 23039031  T
Q  217 catattct 224  Q
    ||||||||    
T  23039032 catattct 23039039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 23036007 - 23036168
Alignment:
Q  59 taaaagatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatac 158  Q
    |||||| ||||| ||||||||||||| |  ||||||||| ||||||||||| | |||| ||||| ||||||||   |||||| |||||||||||||||||    
T  23036007 taaaagttcatcctttcttctcattgtggctccaaattcgtcagtcatgtccaattcttcacttttgattccacttggaagcttccagtcaaaatgatac 23036106  T
Q  159 aacaacatcgcaagggccagctcaatatatatttctcaaaccaaatgtactccctgggcatattct 224  Q
    |||||||||||||||||||  |||    |||||||||||||||||||| |||||||||||||||||    
T  23036107 aacaacatcgcaagggccatgtca----atatttctcaaaccaaatgtgctccctgggcatattct 23036168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 23145757 - 23145918
Alignment:
Q  59 taaaagatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatac 158  Q
    |||||||||||||||||||||||  | || |||||||||||||||||| || | |||| ||| | | ||||||  ||||||| |||||||||||||||||    
T  23145757 taaaagatcatcttttcttctcaccgtgagtccaaattcctcagtcatatccatttcttcacctgttattccactaggaagcttccagtcaaaatgatac 23145856  T
Q  159 aacaacatcgcaagggccagctcaatatatatttctcaaaccaaatgtactccctgggcatattct 224  Q
    || ||||| |||||| ||||||||    |||||| ||||||||||||| |||||||| ||||||||    
T  23145857 aataacattgcaaggaccagctca----atatttgtcaaaccaaatgtgctccctggacatattct 23145918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 23148595 - 23148756
Alignment:
Q  59 taaaagatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatac 158  Q
    |||||||||||||||||| ||||  | || |||||||||||||||||| || | |||| ||| | | ||||||   |||||| |||||||||||||||||    
T  23148595 taaaagatcatcttttctcctcaccgtgagtccaaattcctcagtcatatccatttcttcacctgttattccactgggaagcttccagtcaaaatgatac 23148694  T
Q  159 aacaacatcgcaagggccagctcaatatatatttctcaaaccaaatgtactccctgggcatattct 224  Q
    |||||||| || ||||||||||||    |||||||||||||||||| | |||||||||||||||||    
T  23148695 aacaacattgctagggccagctca----atatttctcaaaccaaatatgctccctgggcatattct 23148756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 23024113 - 23024233
Alignment:
Q  63 agatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatacaaca 162  Q
    |||||||||||||| | || || ||| ||||||| |||||||||||| | |||| ||||| ||||||||| ||||||| |||| |||||||| |||||||    
T  23024113 agatcatcttttctacacactgtgataccaaatttctcagtcatgtccaattcttcacttttgattccattaggaagcttccaatcaaaatggtacaaca 23024212  T
Q  163 acatcgcaagggccagctcaa 183  Q
    || | |||||||| |||||||    
T  23024213 actttgcaagggctagctcaa 23024233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 23139883 - 23140044
Alignment:
Q  59 taaaagatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatac 158  Q
    ||||||||||||||||||||||| ||||| |||||||||||| ||||| || | |||| ||||||| ||||||   |||||| |||| ||||||| | ||    
T  23139883 taaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaac 23139982  T
Q  159 aacaacatcgcaagggccagctcaatatatatttctcaaaccaaatgtactccctgggcatattct 224  Q
    |||||  | ||||||| || ||||    | |||||||||||||||| | || ||||||||||||||    
T  23139983 aacaatgttgcaagggtcaactca----acatttctcaaaccaaatatgcttcctgggcatattct 23140044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 6952 - 6756
Alignment:
Q  24 gtgacattcaaaggttgatgaacaagtggaatcagtaaaagatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagttctgcacttc 123  Q
    |||| ||||||||| |||| ||||   |||| || | |||||||||| |||||||||||||  | |||||||||||| |||||||| | |||| |||||     
T  6952 gtgaaattcaaaggatgataaacagagggaaacaatgaaagatcatcctttcttctcattgtaactccaaattcctctgtcatgtccaattcttcacttt 6853  T
Q  124 tgattccatcaggaagcgtccagtcaaaatgatacaacaacatcgcaagggccagctcaatatatatttctcaaaccaaatgtactccctgggcatattc 223  Q
    ||||||||   |||||| ||||||||||||||||||||||||||||||| |||||||||    | |||||||||||||||| |||| |||||||| ||||    
T  6852 tgattccacatggaagcttccagtcaaaatgatacaacaacatcgcaagcgccagctca----acatttctcaaaccaaatatacttcctgggcaaattc 6757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 21779650 - 21779811
Alignment:
Q  59 taaaagatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatac 158  Q
    ||||||||| | ||||||| |||||| || ||| ||||||||||||||||| | |||| ||||| |||| |||   |||||| |||||||||||||||||    
T  21779650 taaaagatcgttttttcttttcattgtgactccgaattcctcagtcatgtccaattcttcacttttgatcccacttggaagcttccagtcaaaatgatac 21779749  T
Q  159 aacaacatcgcaagggccagctcaatatatatttctcaaaccaaatgtactccctgggcatattct 224  Q
    |||||||||||||||| |  ||||    |||||||||||||||||||| |||||||||||||||||    
T  21779750 aacaacatcgcaagggtcgtctca----atatttctcaaaccaaatgtgctccctgggcatattct 21779811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 62020 - 62114
Alignment:
Q  89 tccaaattcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatacaacaacatcgcaagggccagctcaa 183  Q
    |||||||| |||||||||||| |  ||| ||| | | |||||||  |||||| |||| ||||| |||||||||||||| ||||| ||||||||||    
T  62020 tccaaatttctcagtcatgtccaagtcttcacatttcattccattgggaagcttccaatcaaagtgatacaacaacattgcaagtgccagctcaa 62114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University