View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_low_35 (Length: 214)
Name: NF12865_low_35
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 14743313 - 14743494
Alignment:
| Q |
16 |
agagacagtaagtttcaaaactcttgagaattggaaaatgaacagtgaaaacgacgatattgcaataaataccgttaatttggtgatttgttgggttaat |
115 |
Q |
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| T |
14743313 |
agagacagtaagtttcaaaactcttgagaattggaaaatgaacagtgaaaatgacgatattgcaataaataccgttaatttggtgatttgttgggttaat |
14743412 |
T |
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| Q |
116 |
gggcttgcttgtggagggaatattgaacgattagtagcccatatcgtttaagatttcaagaaaaattgtgtcacccgatttt |
197 |
Q |
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| T |
14743413 |
gggcttgcttgtggagggaatattgaacgattagtagcccatatcgtttaagatttcaagaaaaattgtgtcccccgatttt |
14743494 |
T |
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Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 17583769 - 17583589
Alignment:
| Q |
16 |
agagacagtaagtttcaaaactcttgagaattggaaaatgaacagtgaaaacgacgatattgcaataaataccgttaatttggtgatttgttgggttaat |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17583769 |
agagacagtaagtttcaaaactct-gagaattggaaaatgaacagtgaaaacgacgatattgcaataaataccgttaatttggtgatttgttgggttaat |
17583671 |
T |
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| Q |
116 |
gggcttgcttgtggagggaatattgaacgattagtagcccatatcgtttaagatttcaagaaaaattgtgtcacccgatttt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17583670 |
gggcttgcttgtggagggaatattgaacgattagtagcccatatcgtttaagatttcaagaaaaattgtgtcaaccgatttt |
17583589 |
T |
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