View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_low_38 (Length: 211)
Name: NF12865_low_38
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 36728708 - 36728528
Alignment:
| Q |
19 |
gatggcggcagagaggccaataaagaccatggcacaatgatagccatggttacttgcgctccaagaaaagaaataaaccatggtttcagaattcaaagga |
118 |
Q |
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| T |
36728708 |
gatggcggcagagaggccaataaagaccatggaacaatgatagccatggttacttgcgctccaagaaaagaaataaaccatggtttcagaattcaaagga |
36728609 |
T |
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| Q |
119 |
ttatacatctgccaccattaatgaatcttaaacgtatatatgagaaaaactaaagatataatcgtatctcatcacacaggt |
199 |
Q |
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| T |
36728608 |
ttatacatctgccaccattaatgaatctttaacgtatatatgagaaaaactaaagatataatcgtatctcatcacacaggt |
36728528 |
T |
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Target: chr5; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 36715089 - 36714914
Alignment:
| Q |
19 |
gatggcggcagagaggccaataaagaccatggcacaatgatagccatggttacttgcgctccaagaaaagaaataaa-ccatggtttcagaattcaaagg |
117 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| |
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| T |
36715089 |
gatggcggcagagaggccaaaaaagaccatggcacaatgttagccatggttacttgcgctccaagaaaatcaataaaaccatgatttcagaattcaaagg |
36714990 |
T |
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| Q |
118 |
attatacatctgccaccattaatgaatcttaaacgtatatatgagaaaaactaaagatataatcgtatctcatcac |
193 |
Q |
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|| ||| || ||| ||| || |||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
36714989 |
ataatatatatgctaccgtttatgagtcttaaacgtatatatgaggaaaactaaagatataatcttatctcatcac |
36714914 |
T |
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