View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_low_4 (Length: 476)
Name: NF12865_low_4
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 13 - 473
Target Start/End: Original strand, 24136560 - 24137019
Alignment:
| Q |
13 |
atgaaaaggaatgggtgaagggcggaaaggacaacatagcggaccccagtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccatac |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24136560 |
atgaaaaggaatgggtgaagggcggaaaggacaacatagcgtacccctgtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccatac |
24136659 |
T |
|
| Q |
113 |
caacacatgtgcttaaagcaaacataaggtagatctatttaaatttttgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgacca |
212 |
Q |
| |
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|| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24136660 |
cagcacatgtgcttaaggcaaacataaggtagatctatttaaatttttgccgtcccttttcatcttcaccagcatgtccatagcttattcatagtgacca |
24136759 |
T |
|
| Q |
213 |
gtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcgttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgac |
312 |
Q |
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|||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24136760 |
gtcttagcctaaccagcaataattgcttcccaagatgcacaatcgcgttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgac |
24136859 |
T |
|
| Q |
313 |
catagccgttgatcatggtttccaggaacctacattccgacaaggcattgcctcatacaattcccttgccatatccattttcttgttttgcacatatcat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24136860 |
catagccgttgatcatggtttccaggaacctacattctgacaaggcattacctcatacaattccctt-ccatatccattttcttgttttgcacatatcat |
24136958 |
T |
|
| Q |
413 |
gcaatcatcacattgtatgtcatctttctttttcccggcatttcatcgaaaactcctctcg |
473 |
Q |
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| T |
24136959 |
gcaatcatcacattgtatgtcatctttctttttcccggcatttcatcgaaaactcctctcg |
24137019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 473
Target Start/End: Original strand, 24134246 - 24134708
Alignment:
| Q |
13 |
atgaaaaggaatgggtgaagggcggaaaggacaacatagcggaccccagtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccatac |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| | | |||| ||||||||| ||| |||||||||| |||||| |||||||||||||||||||| |
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| T |
24134246 |
atgaaaaggaatgggtgaagggtggaaaggacaacataccaggcccctgtcttcaccgcctatccatgaagttgtttccttaacaccaaagcagccatac |
24134345 |
T |
|
| Q |
113 |
caacacatgtgcttaaagca-aacataaggtagatctatttaaatttttgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgacc |
211 |
Q |
| |
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|| |||||||||| ||| | ||||||| ||| ||||| |||| ||| | | |||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
24134346 |
cagcacatgtgctcaaatgacaacataatgtatatctacataaactttcgccatcccttttcatcttcaccagcatgtccatagcttcttcataatgacc |
24134445 |
T |
|
| Q |
212 |
agtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcgttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctga |
311 |
Q |
| |
|
||||| | ||||||| |||||||||| |||||||| | |||||||| | ||||||||||||||||||||| | | |||||||||||| | | |||||| |
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| T |
24134446 |
agtctgagcctaaccaccaataattgccacccaagatacacaatcgcggttagccatcatgtcaaacaatttgccaacttgagcaatatttcctttctga |
24134545 |
T |
|
| Q |
312 |
ccatagccgttgatcatggt-ttccaggaacctacattccgacaaggcattgcctcatacaattcccttgccatatccattttcttgttttgcacatatc |
410 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||| |||||||| || |
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| T |
24134546 |
tcatagccgttgatcatggtattccacgaacctacattccaacatggcattgcctcaaacaattcccttgccatatccatttgcttgtattgcacatttc |
24134645 |
T |
|
| Q |
411 |
atgcaatcatcacattgtatgtcatctttctttttcccggcatttcatcgaaaactcctctcg |
473 |
Q |
| |
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|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
24134646 |
ccttaaccatcacattgtatgtcatctttcattttcccggcatttcatcgaaaactcttctcg |
24134708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 24134080 - 24134216
Alignment:
| Q |
81 |
aagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagcaa-acataaggtagatctatttaaatttttgtcgtcccttttcatcttc |
179 |
Q |
| |
|
|||| ||||||||| || ||||||||| ||| |||||||||||| |||||| |||||||||||||||||||| | ||| | ||||||||||||||||| |
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| T |
24134080 |
aagttgtttccctagcatgaaagcagccttacgaacacatgtgctcaaagcaccacataaggtagatctatttacactttcgccgtcccttttcatcttc |
24134179 |
T |
|
| Q |
180 |
accagcatgtccatagcttattcatagtgaccagtct |
216 |
Q |
| |
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||||||||||||||| ||| |||||||||| |||||| |
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| T |
24134180 |
accagcatgtccataacttcttcatagtgatcagtct |
24134216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 61 - 473
Target Start/End: Complemental strand, 45149295 - 45148881
Alignment:
| Q |
61 |
gtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagca-aacataaggtagatctatttaaatttt |
159 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||||| ||| |
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|
| T |
45149295 |
gtcttcaccgcctgtccatgaacttgtttccctaacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaacttt |
45149196 |
T |
|
| Q |
160 |
tgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcg |
259 |
Q |
| |
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|| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| | | ||||| ||||||||||| |||||||| | |||||||| |
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| T |
45149195 |
tgccgtcccttttcatcttcaccagcatgtgcataactttttcatagtgaccagtctgagcataaccagcaataattgccgcccaagatacacaatcgcg |
45149096 |
T |
|
| Q |
260 |
ttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttgatcatggt-ttccaggaacctacattccgacaaggc |
358 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||| |
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| T |
45149095 |
ctgagtcatcatgtcaaacaattccctagcttgagcaatatctccgttctgaccatagccgctgataatggtattccatgaacctacattccgacaaggc |
45148996 |
T |
|
| Q |
359 |
attgcctcatacaattcccttgccatatccattttcttgttttgcacatatcatgcaatcatcacattgtatgtcatctttctttttcccggcatttcat |
458 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
45148995 |
attgcctcaaacaattcccttgccatatccattttcttgtattgcacatatcctgcaatcatcacattgtatgccatctctctttttcccggcatttcat |
45148896 |
T |
|
| Q |
459 |
cgaaaactcctctcg |
473 |
Q |
| |
|
||||||||| ||||| |
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| T |
45148895 |
cgaaaactcttctcg |
45148881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 431
Target Start/End: Complemental strand, 45165655 - 45165284
Alignment:
| Q |
62 |
tcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagca-aacataaggtagatctatttaaattttt |
160 |
Q |
| |
|
|||||||| |||| ||||||| | ||||||| ||| |||||||||| ||| || |||||||||| |||||| ||| || |||| ||||||||| ||| |
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|
| T |
45165655 |
tcttcaccgcctgcccatgaatttgtttccccaactccaaagcagcaatatcagcacatgtgctcaaagcacaaccaaaagtagccctatttaaactttc |
45165556 |
T |
|
| Q |
161 |
gtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcgt |
260 |
Q |
| |
|
|||| ||| |||| || | ||||| || ||||| |||||||||||| ||| | | ||||| |||||||| || |||||||| | || || || |
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|
| T |
45165555 |
tccgtcttgttttatctctacaaacatgttcagagcttcttcatagtgaccgctctgagcataaccagcaataatagccgcccaagatacacagtcacgc |
45165456 |
T |
|
| Q |
261 |
tgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttgatcatggt-ttccaggaacctacattccgacaaggca |
359 |
Q |
| |
|
|| | |||||| ||||| ||||| ||||| |||||||| ||| | ||||||||||||| | |||||||| ||||| |||| || ||||||||| |||| |
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|
| T |
45165455 |
tgtggcatcatatcaaagaattttctagcctgagcaatgtctccaatctgaccatagcctgtaatcatggtattccatgaacttatattccgacagggca |
45165356 |
T |
|
| Q |
360 |
ttgcctcatacaattcccttgccatatccattttcttgttttgcacatatcatgcaatcatcacattgtatg |
431 |
Q |
| |
|
| | |||| |||| |||||||| || ||||||||||| |||||||||| | |||||||| ||||||||| |
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|
| T |
45165355 |
tagactcaaacaactcccttgcgatgtccattttcttagtttgcacataacccgcaatcattgcattgtatg |
45165284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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