View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_low_5 (Length: 454)
Name: NF12865_low_5
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 29006033 - 29006469
Alignment:
| Q |
1 |
cctccaaatacccatactatacatctcatatcaaactaagaatgagaagttgtcacataaagcaaacaaatgtaactctgattcctagtggccccgacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006033 |
cctccaaatacccatactatacatctcatatcaaactaagaatgagaagttgtcacataaagcaaacaaatgtaactctgattcctagtggccccgacat |
29006132 |
T |
|
| Q |
101 |
aaaaaataaataatgaatccaaagacaagggtcagggggtcaagaagcaagttggagctttaattgacaccagttgtctacatacctgttgtttatggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006133 |
aaaaaataaataatgaatccaaagacaagggtcagggggtcaagaagcaagttggagctttaattgacaccagttgtctacatacctgttgtttatggtg |
29006232 |
T |
|
| Q |
201 |
ataataatgtctaaatattcattaagaagaatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgtctcttttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006233 |
ataataatgtctaaatattcattaagaagaatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgtctcttttc |
29006332 |
T |
|
| Q |
301 |
ttattaaacactaatggaaacaactcacaaaatgcttggacacgttgttatggcacaagtatgttgtgtggacctgaagctatagaataggaacaagttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006333 |
ttattaaacactaatggaaacaactcacaaaatgcttggacacgttgttatggcacaagtatgttgtgtggacctgaagctatagaataggaacaagttg |
29006432 |
T |
|
| Q |
401 |
aagcaaactagcaatggcatgaatcaagatttagagt |
437 |
Q |
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| T |
29006433 |
aagcaaactagcaatggcatgaatcaagatttagagt |
29006469 |
T |
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