View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_low_6 (Length: 454)
Name: NF12865_low_6
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 15588142 - 15588529
Alignment:
| Q |
1 |
ttgaagaaaatactaccaagctttggtttaagggataaattcttcttgcttccactaaatatatatcacttccnnnnnnnnatgcagaatatatcacttc |
100 |
Q |
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| T |
15588142 |
ttgaagaaaatactaccaagctttggtttaagggataaattcttcttgcttccactaaatatatatcagttccttttttttatgcagaatatatcacttc |
15588241 |
T |
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| Q |
101 |
catttgtacttgcctcggtatttataaaacatgatttcatgcacattttctgttatcatccgtttatatttaattagtattcactaatatgtaacaaacc |
200 |
Q |
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| T |
15588242 |
catttgtacttgcctcggtatttatagaacatgatttcatgcacattttctgttatcatccgtttatatttaattagtattcactaatatgttacaaacc |
15588341 |
T |
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| Q |
201 |
agtattgtcccggtgtctacccaattagtgtttagacattttataaagttattactgaaaattcaatttgatttctcacaattttctctcagtcatgttt |
300 |
Q |
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| T |
15588342 |
agtattgtcccagtgttttcccaattagtgttaagacattgtataaagttattactgaaaattcaatttgatctctcacaattttctctcagtcatgttt |
15588441 |
T |
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| Q |
301 |
agtctccgacaaagaataaatttatattattctttggcattttcttatgaagggcaaattagaacctaatgttaggaaataagagggc |
388 |
Q |
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| T |
15588442 |
agtctccgacaaagaataaatgtatattattctttggcattttcttatgaagggcaaattagaacctaatgttaggaaataagagggc |
15588529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 15638088 - 15638274
Alignment:
| Q |
1 |
ttgaagaaaatactaccaagctttggtttaagggataaattcttcttgcttccactaaatatatatcacttccnnnnnnnn-atgcagaatatatcactt |
99 |
Q |
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| T |
15638088 |
ttgaagaaaatattaccaagctttggttaaagggataaattcttattgctgccaa-aaatgtatatgacttcttttttttttatgcagaatatatcactt |
15638186 |
T |
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| Q |
100 |
ccatttgtacttgcctcggtatttataaaacatgatttcatgcacattttctgttatcatccgtttatatttaattagtattcactaa |
187 |
Q |
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| T |
15638187 |
ccatttgtacttgtctcggtatttatagaactttatttcattcacattttcttttatcatccttttataattaattagtattcactaa |
15638274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 15592852 - 15592923
Alignment:
| Q |
1 |
ttgaagaaaatactaccaagctttggtttaagggataaattcttcttgcttccactaaatatatatcacttc |
72 |
Q |
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| T |
15592852 |
ttgaagaagatattaccaagctctggctaaagggataaattcttcttccttcaactaaatgtatatcacttc |
15592923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 15592949 - 15592997
Alignment:
| Q |
89 |
atatatcacttccatttgtacttgcctcggtatttataaaacatgattt |
137 |
Q |
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| T |
15592949 |
atatatcacttccctttgtacttgtctcggtattcttagaacatgattt |
15592997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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