View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_low_8 (Length: 438)
Name: NF12865_low_8
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 54013019 - 54013441
Alignment:
| Q |
1 |
gtcttgccagttcaacacaaaaggctgaaaggtagataaatcatgcaggggaaatttaataggcttctagcaatatgaactcaattggtccaccaaaaat |
100 |
Q |
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| T |
54013019 |
gtcttgccagttcaacacaaaaggatgaaaggtagataaatcatgcaggggaaatttaataggcttctagcaatatgaactcaattggtccaccaaaaat |
54013118 |
T |
|
| Q |
101 |
ttaacaatctccaactaagttattgcccaatcgttgaatgtaaaatgtttatttatatttggatagagatgatacattcgtgtaaaagtggataaaaata |
200 |
Q |
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| T |
54013119 |
ttaacaatctccaactaagttattgcccaatcgttgaatgtaaaatgtttatttatatttggataga--tgatacattcatgtaaaagtggataaaaata |
54013216 |
T |
|
| Q |
201 |
aatttaaggccaaaatcaattctagaggttaaaacttcaaattctattaacttcaagttaaaatcaattttggaagtaaaattaattttatttgaaaaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54013217 |
aatttaaggccaaaatcaattctagaggttaaaacttcaaattctattaacttcaagttaaaatcaattctggaagtaaaattaattttatttgaaaaca |
54013316 |
T |
|
| Q |
301 |
ctcaaacatgtcgcagccaaacatatacttcaattggtctctttaccagaccaaactttgaaagtaaaatctcaactatcaaatgagaaagctaatgatt |
400 |
Q |
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| T |
54013317 |
ctcaaacatgtcgcagccaaacatatacttcaattggtctctttaccagaccaaattttgaaagtaaaatctcaactatcaaatgagaaagctaatgatt |
54013416 |
T |
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| Q |
401 |
tgtatttc-aagacactcatgattc |
424 |
Q |
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| T |
54013417 |
tgtatttctaagacactcatgattc |
54013441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 41807270 - 41807340
Alignment:
| Q |
352 |
caaactttgaaagtaaaatctcaactatcaaatgagaaagctaatgatttgtatttcaagacactcatgattc |
424 |
Q |
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| T |
41807270 |
caaattttgaaagtaa--tctcaactatcaaatgagaaaactaatgatttgtatttcaagacactcatgattc |
41807340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 31804659 - 31804607
Alignment:
| Q |
247 |
ttaacttcaagttaaaatcaattttggaagtaaaattaattttatttgaaaaca |
300 |
Q |
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|||||||||||| ||||||||||||| || ||||||||||||||| ||||||| |
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| T |
31804659 |
ttaacttcaagt-aaaatcaattttgaaaacaaaattaattttattagaaaaca |
31804607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 16900775 - 16900739
Alignment:
| Q |
238 |
caaattctattaacttcaagttaaaatcaattttgga |
274 |
Q |
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| T |
16900775 |
caaattctaataagttcaagttaaaatcaattttgga |
16900739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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