View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12865_low_9 (Length: 433)
Name: NF12865_low_9
Description: NF12865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12865_low_9 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 27 - 433
Target Start/End: Complemental strand, 2490255 - 2489849
Alignment:
| Q |
27 |
gtatgaatgctaacagtacacactattagacactctttctcaacataacctatatcattgattgaaaaactaacgggttttgaaaacaggtccacatgaa |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2490255 |
gtatgaatgctaacagtacacactattagacactctttctcaacataacctatatcattgattgaaaaactaatgggttttgaaaacaggtccacatgaa |
2490156 |
T |
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| Q |
127 |
tttgaactaatagcaaagattgtgttgaaaagtatggtacaaagtgtattgctagcactcttcaggtactaagaaagagcacaaaaaattcattgtacat |
226 |
Q |
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| T |
2490155 |
tttgaactaatagcaaagattgtgttgaaaagtatggtacaaagtgtattgctagcactcttcaggtactaagaaagagcacaaaaaattcattgtacat |
2490056 |
T |
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| Q |
227 |
gtagaactagtagaggtaccttctttcaaatcgtctaataattgcttcatccaagtcaaagggcctattggttgcagcgaggacaagaatacgatcctct |
326 |
Q |
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| T |
2490055 |
gtcgaactagtagaggtaccttctttcaaatcgtctaataattgcttcatccaagtcaaagggcctattggttgcagcgaggacaagaatacgatcctct |
2489956 |
T |
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| Q |
327 |
gatttcgaggtaagtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgt |
426 |
Q |
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| T |
2489955 |
gatttcgaggtaagtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgt |
2489856 |
T |
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| Q |
427 |
caacctc |
433 |
Q |
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| T |
2489855 |
caacctc |
2489849 |
T |
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Back To:
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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 244 - 433
Target Start/End: Original strand, 41590948 - 41591137
Alignment:
| Q |
244 |
accttctttcaaatcgtctaataattgcttcatccaagtcaaagggcctattggttgcagcgaggacaagaatacgatcctctgatttcgaggtaagtcc |
343 |
Q |
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| T |
41590948 |
acctcctttcaaatcgccttataatagcttcatccaagtcaaatggcctattggttgctgcaagaacaaggatgcgctctccttgttttgtcgtgagccc |
41591047 |
T |
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| Q |
344 |
atcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctc |
433 |
Q |
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| T |
41591048 |
gtcccaatgggacataaattcattctttattttccgcatggcttcatgctccccaactcttgttcgttgcccaagcatgctatcaacctc |
41591137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 430
Target Start/End: Original strand, 11094442 - 11094533
Alignment:
| Q |
339 |
agtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaac |
430 |
Q |
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| T |
11094442 |
agtccatcccaatgtgtcatgaattcatttttaatcttcctcatggcctcatgttctccgactctagtacgctgaccgagcatgctgtcaac |
11094533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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