View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12866_high_1 (Length: 415)
Name: NF12866_high_1
Description: NF12866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12866_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Original strand, 2172447 - 2172839
Alignment:
| Q |
8 |
gagcagagaacaaatgagaggagaaaagggggaacgttttagcattgtacgcatttaggccccaatatgcaatgggaaccacagcatagataatcaatac |
107 |
Q |
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| T |
2172447 |
gagcagtgaacaaatgagaggagaaaagggggaacgttttagcattgtacgcatttaggccccaatatgcaatgggaaccacagcatagataatcaatac |
2172546 |
T |
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| Q |
108 |
atagcccacaaaaacattgacaatggcaaagaatggtgagataagaggactgaacaagaatgatgccactgcagtccaatcaagtgtgatggctccaatt |
207 |
Q |
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| T |
2172547 |
atagcccacaaaaacattgacaatggcaaagaatggtgagataagaggactgaacaagaatgatgccactgcagtccaatcaagtgtgatggctccaatt |
2172646 |
T |
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| Q |
208 |
ccaagacctttcatgcctgagcctaactgctgagctgtgactgacttggtgaatacccaacagacccatgatatgcttgtgagtgttgtgaacaagtatc |
307 |
Q |
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| T |
2172647 |
ccaagacctttcatgcctgagcctaactgctgagctgtgactgacttggtgaatacccaacagacccatgatatgcttgtgagtgttgtgaacaagtatc |
2172746 |
T |
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| Q |
308 |
ctgggatcacataccatgaaaaactgcatactagtgcaataaagaaaaactttgcccttgaaattcggtggtcgtcgtctttctcatgcaaag |
400 |
Q |
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| T |
2172747 |
ctgggatcacataccatgaaaaactgcatactagtgcaataaagaaaaactttgcccttgaaattcggtggtcgtcgtctttctcatgcaaag |
2172839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 67 - 370
Target Start/End: Complemental strand, 36901920 - 36901617
Alignment:
| Q |
67 |
ccccaatatgcaatgggaaccacagcatagataatcaatacatagcccacaaaaacattgacaatggcaaagaatggtgagataagaggactgaacaaga |
166 |
Q |
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| T |
36901920 |
ccccaatatgctataggaatcacagcatacacaagcaatgcatagccaacaaaaacattgacaatggcaaagaaaggtgagataagaggactgaacaaga |
36901821 |
T |
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| Q |
167 |
atgatgccactgcagtccaatcaagtgtgatggctccaattccaagacctttcatgcctgagcctaactgctgagctgtgactgacttggtgaataccca |
266 |
Q |
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|||| || || |||| |||||||||||| | |||||||| ||| | ||| ||||| ||||| |||| || |||||||||||||| |||| ||||||||| |
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| T |
36901820 |
atgaagcaacagcagaccaatcaagtgttaaggctccaagtcctaaaccattcattcctgaacctatttgttgagctgtgactgatttggagaataccca |
36901721 |
T |
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| Q |
267 |
acagacccatgatatgcttgtgagtgttgtgaacaagtatcctgggatcacataccatgaaaaactgcatactagtgcaataaagaaaaactttgccctt |
366 |
Q |
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| T |
36901720 |
acatacccatgatatgcttgtaagcgttgtgaataagtatcctgggactatataccatgtaaaactgcatactagtgctatgaagaaaaactttgccctt |
36901621 |
T |
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| Q |
367 |
gaaa |
370 |
Q |
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|||| |
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| T |
36901620 |
gaaa |
36901617 |
T |
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