View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12867_high_1 (Length: 500)
Name: NF12867_high_1
Description: NF12867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12867_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Original strand, 38125134 - 38125602
Alignment:
| Q |
17 |
attaccaagtaagaagtaaacctaattttgattaatatctaccaaannnnnnnnngtaattaattcaatattcttgactgatgtattgttgtttttgata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38125134 |
attaccaagtaagaagtaaacctaattttgattaatatctaccaaaattttttttgtaattaattcaatattcttgactgatgtattgttgtttttgata |
38125233 |
T |
|
| Q |
117 |
gttaaagttattagaagcttggggaagcatggaaaggcaacatgtatcaacaattactgccaccaaagagtgtttgcattcagctgtctgcagagttcct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38125234 |
gttaaagttattagaagcttggggaagcatggaaaggcaacatgtatcaacaattactgccaccaaagagtgtttgcattcagctgtctgcagagttcct |
38125333 |
T |
|
| Q |
217 |
cttttggaaggtgctaaggtacatcggcatgtcgagtaaagagtctaagtgatatttgtcgatttcagggattgaattgaccgaccattacaatttcaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38125334 |
cttttggaaggtgctaaggtacatcggcatgtcgagtaaagagtctaagtgatatttgtcgatttcagggattgaattgaccgaccattacaatttcaaa |
38125433 |
T |
|
| Q |
317 |
tattaaaatgtctattttctctagacatgtccattgaannnnnnnnatatgtttctacacaatctaagtgatcatgatagggatggtgcattgacggaat |
416 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
38125434 |
tattaaaatgtctattttctatagacatgtccattgaa-attttttatatgtttctacataatctaagtgatcatgatagggatggtgcattgacagaat |
38125532 |
T |
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| Q |
417 |
cctgtttatgcttaacttataggtgaacatacaatttacatccattgctattcgtcaggcctctgatgtc |
486 |
Q |
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| T |
38125533 |
tctgtttatgcttaacttataggtgaacatacaatttacatccattgctattcgtcaggcctctgatgtc |
38125602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 333
Target Start/End: Complemental strand, 5540014 - 5539959
Alignment:
| Q |
278 |
atttcagggattgaattgaccgaccattacaatttcaaatattaaaatgtctattt |
333 |
Q |
| |
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|||| ||||||||||||||| |||| |||||||||||| | |||||||||||||| |
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| T |
5540014 |
atttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctattt |
5539959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 5550806 - 5550861
Alignment:
| Q |
278 |
atttcagggattgaattgaccgaccattacaatttcaaatattaaaatgtctattt |
333 |
Q |
| |
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|||| ||||||| ||||||| |||| ||||||||||||| | |||||||||||||| |
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| T |
5550806 |
atttgagggattaaattgacagacccttacaatttcaaagactaaaatgtctattt |
5550861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 333
Target Start/End: Complemental strand, 15801515 - 15801460
Alignment:
| Q |
278 |
atttcagggattgaattgaccgaccattacaatttcaaatattaaaatgtctattt |
333 |
Q |
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|||| |||||||||||||||||||| ||||||||| ||| | |||||| ||||||| |
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| T |
15801515 |
atttgagggattgaattgaccgaccgttacaatttgaaagactaaaatatctattt |
15801460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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