View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12867_low_2 (Length: 371)
Name: NF12867_low_2
Description: NF12867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12867_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 36536589 - 36536247
Alignment:
| Q |
14 |
gatgaagtttataagaaacttgtaatttataaggattctgtttcattgattacttgtttaaaaagtaaaagtatggaacaatggttagatttgtggattt |
113 |
Q |
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| T |
36536589 |
gatgaagtttataagaaacttgtaatttataaggattctgtttcattgattacttgtttaaaaagtaaaagtatggaacaatggttagatttgtggattt |
36536490 |
T |
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| Q |
114 |
tgtctgatgaatatgaaggtgttgagtgttggatgaaggtgcaaactcttggtatgtttacgagtttagagcgtcctgttggtgtctggaaaaatgaagt |
213 |
Q |
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| T |
36536489 |
tgtctgatgaatatgaaggtgttgagtgttggatgaaggtgcaaactcttggtatgtttacgagtttagagcgtcctgttggtgtctggaaaaatgaagt |
36536390 |
T |
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| Q |
214 |
tcttatggctacagataaaatgatacatagtgttggtggagttgttgcttggcttcctgaagatgatattggagctgagttttcctataacattataaat |
313 |
Q |
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| T |
36536389 |
tcttatggctacagataaaatgatacatagtgttggtggagttgttgcttggcttcctgaagatgatgttggagctgagttttcctataacattataaat |
36536290 |
T |
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| Q |
314 |
tatcaagagaggttctttcctttacatgatgtggagaaaattg |
356 |
Q |
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| T |
36536289 |
tatcaagagaggttctttcctttacatgatgtggaggaaattg |
36536247 |
T |
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