View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12867_low_3 (Length: 246)
Name: NF12867_low_3
Description: NF12867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12867_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 25589176 - 25589400
Alignment:
| Q |
1 |
tcttgtcaacggtactacttgtggagtccaggcagcaataatggcaacctgttcaccgggagaatatctgattcttcctaggaattctcatttatcagct |
100 |
Q |
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| T |
25589176 |
tcttgtcaacggtactacttgtggagtccaggcagcaataatggcaacctgttcaccgggagaatatctgattcttcctaggaattctcatttatcagct |
25589275 |
T |
|
| Q |
101 |
atatctgccatggttttatctggtgcatcgcctaagtacattattcctgactataaaaatgattgggacatcgctggtggcgtcactccattacaggtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589276 |
atatctgccatggttttatctggtgcatcgcctaagtacattattcctgactataaaaatgattgggacatcgctggtggcgtcactccattacaggtga |
25589375 |
T |
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| Q |
201 |
ttcagatatcatacactaacatatt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
25589376 |
ttcagatatcatacactaacatatt |
25589400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 25598828 - 25599052
Alignment:
| Q |
1 |
tcttgtcaacggtactacttgtggagtccaggcagcaataatggcaacctgttcaccgggagaatatctgattcttcctaggaattctcatttatcagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25598828 |
tcttgtcaacggtactacttgtggagtccaggcagcaataatggcaacctgttcaccgggagaatatctgattcttcctaggaattctcatttatcagct |
25598927 |
T |
|
| Q |
101 |
atatctgccatggttttatctggtgcatcgcctaagtacattattcctgactataaaaatgattgggacatcgctggtggcgtcactccattacaggtga |
200 |
Q |
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| T |
25598928 |
atatctgccatggttttatctggtgcatcgcctaagtacattattcctgactataaaaatgattgggacatcgctggtggcgtcactccattacaggtga |
25599027 |
T |
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| Q |
201 |
ttcagatatcatacactaacatatt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
25599028 |
ttcagatatcatacactaacatatt |
25599052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 25584345 - 25584538
Alignment:
| Q |
11 |
ggtactacttgtggagtccaggcagcaataatggcaacctgttcaccgggagaatatctgattcttcctaggaattctcatttatcagctatatctgcca |
110 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||| ||||||||| | |||| ||||||||||||||||||||||| |
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| T |
25584345 |
ggtactacttgtgggattcaggcagcaataatggcaacctgttcaccaggagaatttcttattcttcctcgaaattgtcatttatcagctatatctgcca |
25584444 |
T |
|
| Q |
111 |
tggttttatctggtgcatcgcctaagtacattattcctgactataaaaatgattgggacatcgctggtggcgtcactccattacaggtgattca |
204 |
Q |
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|||| ||||| |||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
25584445 |
tggtattatccggtgcagtgcctaagtacattgttcctgactataaaaatgactgggacatcgctggtggtgtcacgccattacaggtgattca |
25584538 |
T |
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