View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12867_low_4 (Length: 242)

Name: NF12867_low_4
Description: NF12867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12867_low_4
NF12867_low_4
[»] chr5 (11 HSPs)
chr5 (20-242)||(12151742-12151964)
chr5 (20-74)||(18333464-18333518)
chr5 (20-55)||(170569-170604)
chr5 (20-75)||(15480590-15480645)
chr5 (20-75)||(18333697-18333752)
chr5 (30-76)||(9682313-9682359)
chr5 (20-69)||(7369755-7369804)
chr5 (20-64)||(8287832-8287876)
chr5 (20-52)||(24487666-24487698)
chr5 (20-76)||(25258091-25258147)
chr5 (20-76)||(25321881-25321937)
[»] chr3 (3 HSPs)
chr3 (20-75)||(45828050-45828105)
chr3 (20-76)||(8018999-8019055)
chr3 (24-75)||(22729135-22729186)
[»] scaffold0129 (1 HSPs)
scaffold0129 (20-75)||(14334-14389)
[»] chr8 (5 HSPs)
chr8 (20-75)||(38475778-38475833)
chr8 (20-73)||(8929048-8929101)
chr8 (20-64)||(4828324-4828368)
chr8 (20-64)||(4963385-4963429)
chr8 (24-64)||(5590377-5590417)
[»] chr7 (3 HSPs)
chr7 (20-55)||(23839095-23839130)
chr7 (192-234)||(3507740-3507782)
chr7 (18-55)||(40746527-40746564)
[»] chr6 (4 HSPs)
chr6 (20-55)||(12330197-12330232)
chr6 (20-54)||(5648691-5648725)
chr6 (23-55)||(12330309-12330341)
chr6 (20-64)||(27656489-27656533)
[»] chr4 (3 HSPs)
chr4 (20-53)||(12005489-12005522)
chr4 (20-52)||(400586-400618)
chr4 (20-52)||(35796763-35796795)
[»] chr1 (1 HSPs)
chr1 (20-53)||(2859647-2859680)
[»] chr2 (1 HSPs)
chr2 (20-64)||(31008580-31008624)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 12151964 - 12151742
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccacatattctaagattaagttcggcaatgaagcatgaacaaagaacttaatcaactctg 119  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  12151964 cacctcacaagccggttttgtgaggttgtgttaggcgctaccacatattctaagattaagttcggcaatgaattatgaacaaagaacttaattaactctg 12151865  T
Q  120 caatgtttacaaagaagtatgtcatgttaagctggtgtaacttaagtgaaactaaaatgcttttattgatccaaaaacacatcacatataaaagagtctt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12151864 caatgtttacaaagaagtatgtcatgttaagctggtgtaacttaagtgaaactaaaatgcttttattgatccaaaaacacatcacatataaaagagtctt 12151765  T
Q  220 tcagctaagctttttaaaatttt 242  Q
    |||||||||||||||||||||||    
T  12151764 tcagctaagctttttaaaatttt 12151742  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 18333518 - 18333464
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccacatattctaaga 74  Q
    ||||||||| |||||||||||| ||||||||||||| | |||||| |||||||||    
T  18333518 cacctcacaagccggttttgtggggttgtgttaggcccaaccacaaattctaaga 18333464  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 170604 - 170569
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggc 55  Q
    ||||||||| ||||||||||||||||||||||||||    
T  170604 cacctcacaagccggttttgtgaggttgtgttaggc 170569  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 15480590 - 15480645
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccacatattctaagat 75  Q
    ||||||||| |||||||||||| ||||||||||||| | ||||||  |||||||||    
T  15480590 cacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaagat 15480645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 18333752 - 18333697
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccacatattctaagat 75  Q
    ||||||||| |||||||||||| ||||||||||||| | |||||  ||||||||||    
T  18333752 cacctcacaagccggttttgtggggttgtgttaggcccaaccacgaattctaagat 18333697  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 9682359 - 9682313
Alignment:
Q  30 gccggttttgtgaggttgtgttaggcgctaccacatattctaagatt 76  Q
    |||||||||||||||||||||||||  | |||||| |||||||||||    
T  9682359 gccggttttgtgaggttgtgttaggtccaaccacaaattctaagatt 9682313  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 7369755 - 7369804
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccacatattc 69  Q
    ||||||||| |||||||||||| ||||||||||||| | |||||| ||||    
T  7369755 cacctcacaagccggttttgtggggttgtgttaggcccaaccacaaattc 7369804  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 8287832 - 8287876
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccaca 64  Q
    ||||||||| |||||||||||| ||||||||||||| | ||||||    
T  8287832 cacctcacaagccggttttgtggggttgtgttaggcccaaccaca 8287876  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 24487698 - 24487666
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgtta 52  Q
    ||||||||| |||||||||||||||||||||||    
T  24487698 cacctcacaagccggttttgtgaggttgtgtta 24487666  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 25258147 - 25258091
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccacatattctaagatt 76  Q
    ||||||||| |||||||||||| ||||||||||||| | |||||   ||||||||||    
T  25258147 cacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatt 25258091  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 25321937 - 25321881
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccacatattctaagatt 76  Q
    ||||||||| |||||||||||| ||||||||||||| | |||||   ||||||||||    
T  25321937 cacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatt 25321881  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 45828050 - 45828105
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccacatattctaagat 75  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||  |||||||||    
T  45828050 cacctcacaagccggttttgtgaggttgtgttaggccctaccacaatttctaagat 45828105  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 8018999 - 8019055
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccacatattctaagatt 76  Q
    ||||||||| |||||||||||| ||||||||||||| | ||||||  ||||||||||    
T  8018999 cacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaagatt 8019055  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 22729135 - 22729186
Alignment:
Q  24 tcacacgccggttttgtgaggttgtgttaggcgctaccacatattctaagat 75  Q
    ||||| |||||||||||||||||||||||||| | ||||||  |||||||||    
T  22729135 tcacaagccggttttgtgaggttgtgttaggcccaaccacaatttctaagat 22729186  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 14334 - 14389
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccacatattctaagat 75  Q
    ||||||||| |||||||||||| ||||||||||||| | ||||| | |||||||||    
T  14334 cacctcacaagccggttttgtggggttgtgttaggcccaaccacgttttctaagat 14389  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 38475778 - 38475833
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccacatattctaagat 75  Q
    ||||||||| |||||||||||  ||||||||||||| | |||||| ||||||||||    
T  38475778 cacctcacaagccggttttgtagggttgtgttaggcccaaccacaaattctaagat 38475833  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 8929048 - 8929101
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccacatattctaag 73  Q
    ||||||||| |||||||||||| ||||||||||||| | |||||  ||||||||    
T  8929048 cacctcacaagccggttttgtggggttgtgttaggcccaaccacgaattctaag 8929101  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 4828324 - 4828368
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccaca 64  Q
    ||||||||| |||||||||||| ||||||||||||| | ||||||    
T  4828324 cacctcacaagccggttttgtggggttgtgttaggcccaaccaca 4828368  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 4963385 - 4963429
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccaca 64  Q
    ||||||||| |||||||||||| ||||||||||||| | ||||||    
T  4963385 cacctcacaagccggttttgtggggttgtgttaggcccaaccaca 4963429  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 5590417 - 5590377
Alignment:
Q  24 tcacacgccggttttgtgaggttgtgttaggcgctaccaca 64  Q
    ||||| |||||||||||||||||||||||||| | ||||||    
T  5590417 tcacaagccggttttgtgaggttgtgttaggcccaaccaca 5590377  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 23839130 - 23839095
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggc 55  Q
    ||||||||| ||||||||||||||||||||||||||    
T  23839130 cacctcacaagccggttttgtgaggttgtgttaggc 23839095  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 3507782 - 3507740
Alignment:
Q  192 aaaaacacatcacatataaaagagtctttcagctaagcttttt 234  Q
    ||||||| ||||||||||||| | |||||||||||||||||||    
T  3507782 aaaaacatatcacatataaaaaaatctttcagctaagcttttt 3507740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 40746527 - 40746564
Alignment:
Q  18 cacacctcacacgccggttttgtgaggttgtgttaggc 55  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  40746527 cacacctcacaagccagttttgtgaggttgtgttaggc 40746564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 12330232 - 12330197
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggc 55  Q
    ||||||||| ||||||||||||||||||||||||||    
T  12330232 cacctcacaagccggttttgtgaggttgtgttaggc 12330197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 5648725 - 5648691
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttagg 54  Q
    ||||||||| |||||||||||||||||||||||||    
T  5648725 cacctcacaagccggttttgtgaggttgtgttagg 5648691  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 12330341 - 12330309
Alignment:
Q  23 ctcacacgccggttttgtgaggttgtgttaggc 55  Q
    |||||| ||||||||||||||||||||||||||    
T  12330341 ctcacaagccggttttgtgaggttgtgttaggc 12330309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 27656489 - 27656533
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccaca 64  Q
    ||||||||| |||||||||||| ||||||||||||| | ||||||    
T  27656489 cacctcacaagccggttttgtggggttgtgttaggcccaaccaca 27656533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 12005522 - 12005489
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttag 53  Q
    ||||||||| ||||||||||||||||||||||||    
T  12005522 cacctcacaagccggttttgtgaggttgtgttag 12005489  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 400618 - 400586
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgtta 52  Q
    ||||||||| |||||||||||||||||||||||    
T  400618 cacctcacaagccggttttgtgaggttgtgtta 400586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 35796795 - 35796763
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgtta 52  Q
    ||||||||| |||||||||||||||||||||||    
T  35796795 cacctcacaagccggttttgtgaggttgtgtta 35796763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 2859680 - 2859647
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttag 53  Q
    ||||||||| ||||||||||||||||||||||||    
T  2859680 cacctcacaagccggttttgtgaggttgtgttag 2859647  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 31008624 - 31008580
Alignment:
Q  20 cacctcacacgccggttttgtgaggttgtgttaggcgctaccaca 64  Q
    ||||||||| |||||||||||| ||||||||||||| | ||||||    
T  31008624 cacctcacatgccggttttgtggggttgtgttaggctcaaccaca 31008580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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