View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_high_12 (Length: 336)
Name: NF12868_high_12
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 23367089 - 23366787
Alignment:
| Q |
16 |
atgaacaattatcaaagcattaaaaagtgaactaaagaaaaatctactagctagtatcactctttcttacctccttgacgccaatggtgacatacttttc |
115 |
Q |
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| T |
23367089 |
atgaacaattaa-aaagcattaaaaagtgaactaaagaaaaatctactagctagtatcactctt----acctccttgacgccaatggtgacatgcttttc |
23366995 |
T |
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| Q |
116 |
cttcaaatccttaagaggagttttcaatcggttaagtaaacctaatgcagaaattggagacaagggtgctatgaccaaatcatcagtagcaacatacata |
215 |
Q |
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| T |
23366994 |
cttcaaatccttaagaggagttttcaatcggttaagtaaacctaatgcagaaattggagacaagggtgctatggccaaatcatcagtagcaacatacata |
23366895 |
T |
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| Q |
216 |
gctggacccttgacataaccttcatgacttgccatgttagaaaaatttattctcttaaactttccagcataactcttatcttcaccaggtttggaaaatt |
315 |
Q |
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| T |
23366894 |
gctggacccttgacataaccttcatgacttgccatgttagaaaaatttattctcttaaactttccagcataactcttatcctcaccaggtttggaaaatt |
23366795 |
T |
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| Q |
316 |
gaacaaag |
323 |
Q |
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| T |
23366794 |
gaacaaag |
23366787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 22632707 - 22632861
Alignment:
| Q |
82 |
ttacctccttgacgccaatggtgacatacttttccttcaaatccttaagaggagttttcaatcggttaagtaaacctaatgcagaaattggagacaaggg |
181 |
Q |
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| T |
22632707 |
ttacctccttggtgccaatggtgacaactttttccttcaaatcattaagaggagttttcagtcggttaagtaaacccaaagctgaaattggagtcaatgg |
22632806 |
T |
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| Q |
182 |
tgcta---tgaccaaatcatcagtagcaacatacatagctggacccttgacataa |
233 |
Q |
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| T |
22632807 |
tgctacattaaccaaatcatctgtagcaaaatacatagctggacccttgacataa |
22632861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 22626469 - 22626316
Alignment:
| Q |
82 |
ttacctccttgacgccaatggtgacatacttttccttcaaatccttaagaggagttttcaatcggttaagtaaacctaatgcagaaattggagacaaggg |
181 |
Q |
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|||||||||||| |||||| |||| | ||||||||||| || ||||||||||| ||||| |||||||||||||| || || || ||||||| ||||| |
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| T |
22626469 |
ttacctccttgatgccaattgtgataactttttccttcaattcattaagaggagtattcaaacggttaagtaaacccaaagctgagattggagttaaggg |
22626370 |
T |
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| Q |
182 |
tgctatgaccaaatcatcagtagcaacatacatagctggacccttgacataacc |
235 |
Q |
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| T |
22626369 |
tgctacaaccagatcatctgtagcgaaatacatagctggacccttaacataacc |
22626316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 22626280 - 22626229
Alignment:
| Q |
268 |
tcttaaactttccagcataactcttatcttcaccaggtttggaaaattgaac |
319 |
Q |
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||||||| ||||||||||| ||||||||| ||||||||||| ||| |||||| |
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| T |
22626280 |
tcttaaaatttccagcatagctcttatctacaccaggtttgaaaatttgaac |
22626229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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