View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_high_14 (Length: 327)
Name: NF12868_high_14
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 50256684 - 50256997
Alignment:
| Q |
8 |
tcgttcactgtcttagtcatcttaattctcactcctccctaacacaaacaaacttgcattccctcgcaaaaatcccaaccactcctttatgagcctcttc |
107 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50256684 |
tcgttcaccatcttagtcctcttaattctcactcctccctaacacaaacaaacttgcattccctcgcaaaaatcccacccactcctttatgagcctcttc |
50256783 |
T |
|
| Q |
108 |
ttggtcaagcataattaattaatcatcagctctctgagaacaaacgagcagcataannnnnnnaggggaaacaagcatcataattttgaaaaagcatagc |
207 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50256784 |
ttggttaagcataattaattaatcatcagctctctaagaacaaacgagcagcataatttttttaggggaaacaagcatcataattttgaaaaagcatagc |
50256883 |
T |
|
| Q |
208 |
tccttaatcaaccttcattcttttcatcttcttcgtaaaagaaaaccaaaattcccaaataagaacatttaagatctaaagaacacataaatcacaacaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50256884 |
tccttaatcaaccttcattcttttcatcttcttcgtaaaagaaaaccaaaattcccaaataagaacatttaagatctaaagaacacataaatcacaacaa |
50256983 |
T |
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| Q |
308 |
attagagtttatga |
321 |
Q |
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|||||||||||||| |
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| T |
50256984 |
attagagtttatga |
50256997 |
T |
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