View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_high_15 (Length: 326)
Name: NF12868_high_15
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_high_15 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 32024275 - 32024149
Alignment:
| Q |
200 |
cgccaaatcctgcttttctttctccaattcaatagtaacctgttcttcagcgtgcttctccgccctaagaatcggttcataataatccgaatgttcatcc |
299 |
Q |
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| T |
32024275 |
cgccaaatcctgcttttctttctccaattcaatagtaacctgttcttcagcgtgcttctccgccctaagaatcggttcataataatccgaatgttcatcc |
32024176 |
T |
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| Q |
300 |
atacactgcttcaattttgcagtaacc |
326 |
Q |
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| T |
32024175 |
atacactgcttcaattttgcagtaacc |
32024149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 32024465 - 32024361
Alignment:
| Q |
1 |
cacagtattctcatatcaaattacaatttttaacctaattttatcaattgaaatatgtgggtgctacaacacagtagtaataataatacaacaacaatga |
100 |
Q |
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| T |
32024465 |
cacagtattctcatatcaaattacaatttttaacctaattttatcaattgaaatatgtgggtgctacaacac---agtaataataatacaacaacaatga |
32024369 |
T |
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| Q |
101 |
attattat |
108 |
Q |
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|||||||| |
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| T |
32024368 |
attattat |
32024361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 32024322 - 32024289
Alignment:
| Q |
147 |
cacttttgatttgaaggggcttcctgctgattct |
180 |
Q |
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| T |
32024322 |
cacttttgatttgaaggggcttcctgctgattct |
32024289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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