View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_high_16 (Length: 319)
Name: NF12868_high_16
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 37 - 297
Target Start/End: Complemental strand, 14702501 - 14702238
Alignment:
| Q |
37 |
gagtaaaaagaaacaaataatattgaaaccagagnnnnnnnctaataatcttaaactaattttaccaatagcataagctttaacttaataatttcaccct |
136 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||| || ||||||||||||| || |
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| T |
14702501 |
gagtaaaaagaaacaaataatattgaaaccagagaaaaaaactaatagtcttaaactaattttaccaatagcatatgctt-aagttaataatttcactct |
14702403 |
T |
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| Q |
137 |
taaattctaataagttttaacattgtcaacattatacacttcagatcaaattaagttaaaataaatcac--gatatattagtacatatacactttattag |
234 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
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| T |
14702402 |
taaattccaataagttttaagattgtcaacattatacacttcagatcaaattaagttaaaagaaatcactaaatatattagtatatatacactttattag |
14702303 |
T |
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| Q |
235 |
aaggacaaattaa--atactcttctaaataatgagacacacatattatatatagacacacatata |
297 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14702302 |
aaggacaaattaaatatactcttctaaataatgagacacacatattatatatagacacacatata |
14702238 |
T |
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