View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_high_2 (Length: 562)
Name: NF12868_high_2
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 539
Target Start/End: Complemental strand, 43369625 - 43369092
Alignment:
| Q |
17 |
atactccccacaaattatgtggacacctcgagcgtgacaga-------taacccaacgtattttagataggctcaaataatatcttagaaagtttgagtt |
109 |
Q |
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| T |
43369625 |
atactccccacaaattatgtggacacctcgagcgtgacagacaacagataacccaacagattttagataggctcaaataataccttagaaagtttgagtt |
43369526 |
T |
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| Q |
110 |
ttgagtttggtctaactcatcctagtatcctacaaaattgaaaagtaaagtgaggaccactcatgcaatatgccacttctcaacaaactggatcccacca |
209 |
Q |
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| T |
43369525 |
ttgagtttggtctaactcatcctagtatcctacaaaattgaaaagtaaagtgaggaccactcatgcaatatgccacttctcaacaaactggatcccacca |
43369426 |
T |
|
| Q |
210 |
aatatgccttggctttagatatagtggaactttcaatacaaaatttgtgtgtgcaaaatattgaagtaaaaggaccattaggaatgtgccaagtatacgc |
309 |
Q |
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| T |
43369425 |
aatatgccttggctttagatatagtggaactttcaatacaaaatttgtgtgtgcaaaatattgaagtaaaaggaccattaggaatgtgccaagtatatgc |
43369326 |
T |
|
| Q |
310 |
cactacaaagtaagcactcacaatcatgatnnnnnnnnnnnnntcacctatctctactataacaggacaaagtcttaatttgttaaaacactggaaagta |
409 |
Q |
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| T |
43369325 |
ctctacaaagtaagcactcacaatcatgataaaaacagaaaaatcacctatctctactataacaggacaaagtcttaatttgttaaaacactggaaagta |
43369226 |
T |
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| Q |
410 |
ttgttaaaaataagcatgaga----tcnnnnnnnnnnaatttaaataaataagcatcaaattcttgcaaggtgcaacagaaagggacaccactaatattt |
505 |
Q |
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| T |
43369225 |
ttgttaaaaataagcatcagattttttttttttttttaatttaaataaataagcatcaaattcttgcaaggtgtaacagaaagggacaccactaatattt |
43369126 |
T |
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| Q |
506 |
ccctttttaagagagattctatataaaatgactt |
539 |
Q |
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| T |
43369125 |
ccctttttaagaaagattctatataaagtgactt |
43369092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 142 - 339
Target Start/End: Complemental strand, 40604820 - 40604629
Alignment:
| Q |
142 |
caaaattgaaaagtaaagtgaggaccactcatgcaatatgccacttctcaacaaactgga-tcccaccaaatatgccttggctttagatatagtggaact |
240 |
Q |
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||||||| || |||||||||||||||| | |||||| | ||||||||||||||| || | | |||| ||||| |||||||||||||| ||| |||| |
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| T |
40604820 |
caaaattaaatagtaaagtgaggacca----tccaatatacaacttctcaacaaactagaatactgccaagtatgc-ttggctttagatattgtgaaact |
40604726 |
T |
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| Q |
241 |
ttcaatacaaaatttgtgtgtgcaaaatattgaagtaaaaggaccattaggaatgtgccaagtatacgccactacaaagtaagcactcacaatcatgat |
339 |
Q |
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| T |
40604725 |
ttcaatactaa--ttgtgtgtacaaaatatttaagtaaaaggaccattgggaatgtgccaagtatatgcctctacaaagtaagcactcacagtcatgat |
40604629 |
T |
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