View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_high_3 (Length: 535)
Name: NF12868_high_3
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 12 - 523
Target Start/End: Original strand, 55209 - 55720
Alignment:
| Q |
12 |
agagatagttgatgaagttgaggaagctaaggacagctagtaaccaatagaaaaggtcaagtttgtctttgttcagattgttgtcatgaagccaaccacc |
111 |
Q |
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| T |
55209 |
agagatagttgatgaagttgaggaagctaaggacagctagtaaccaatagaaaaggtcaagtttgtctttgttcagattgttgtcatgaagccaaccacc |
55308 |
T |
|
| Q |
112 |
accaccactagaagttgaagtgattttattcaccaaagaaaccaatagtgagctgagataaaatccaaatgaataggagcaatatgtgatggcagtgaag |
211 |
Q |
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| T |
55309 |
accaccactagaagttgaagtgattttattcaccaaagaaaccaatagtgagctgagataaaatccaaatgaataggagcaatatgtgatggcagtgaag |
55408 |
T |
|
| Q |
212 |
aatgtctgcatccctttcaaggactgtttgtagaagaactcaatgaggccaactgcagtaaacatctctgacaaaccaaatattatgaattgtggtgtaa |
311 |
Q |
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| T |
55409 |
aatgtctgcatccctttcaaggactgtttgtagaagaactcaatgaggccaactgcagtaaacatctctgacaaaccaaatattatgaattgtggtgtaa |
55508 |
T |
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| Q |
312 |
tccaaaatatggacagagtttggttcaggttcacagctgcatcccttctctttttctccataacagctgctgaaaccatagaaaatgtagccagaaaaag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55509 |
tccaaaatatggacagagtttggttcaggttcacagctgcatcccttctctttttctccataacagctgctgaaaccatagaaaatgtagccagaaaaag |
55608 |
T |
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| Q |
412 |
gccaatccctattctctgcaaaggtgagattcctgactcatgacctgttatttttcttgcaaagggaacaaataaagtatcatagagagggactacaacg |
511 |
Q |
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| T |
55609 |
gccaatccctattctctgcaaaggtgagattcctgactcatgacctgttatttttcttgcaaagggaacaaataaagtatcatagagagggactacaacg |
55708 |
T |
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| Q |
512 |
atgagaaaaatg |
523 |
Q |
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|||||||||||| |
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| T |
55709 |
atgagaaaaatg |
55720 |
T |
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