View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_high_6 (Length: 434)
Name: NF12868_high_6
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 12 - 417
Target Start/End: Original strand, 39929509 - 39929918
Alignment:
| Q |
12 |
agagacatacatatatatggatacgctcaattnnnnnnntctgtcaacttattctaannnnnnnn---atcaatttattaattaagaaaatcatagagtg |
108 |
Q |
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| T |
39929509 |
agagacatacatatatatggatacgctcaattaaaaaaatctgtcaacttattctaatttttttttttatcaatttattaattaagaaaatcatagagta |
39929608 |
T |
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| Q |
109 |
caatactttgaatttcaata--gacannnnnnnnnccaaacnnnnnnnnnncttcttttaatacaaaaaatagagtacagaacatcatatgaatgagatg |
206 |
Q |
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|||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39929609 |
caatactttgaatttcaataaagacatttttttttc-aaacaaaacaaaaacttcttttaatacaaaaaatagagtacagaacatcatatgaatgagatg |
39929707 |
T |
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| Q |
207 |
taagacatgtcaactatgttggcacacaccgcaaaattatctcatgttaaaacaaacttaaataactagattttaatccaataacaatgtttaatcaacc |
306 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39929708 |
taagacatgtcaactatgttggcacgcaccgcaaaattatctcttattaaaacaaacttaaataactagattttaatccaataacaatgtttaatcaacc |
39929807 |
T |
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| Q |
307 |
accagttgaagtaggcaaggggtgacgacacattgggcacatgtgactagtttctagccattgcacaatgcattcatggtgataaagatgatcacaaggc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39929808 |
accagttgaagtaggcaaggggtgacgacacattgggcacatgtgactagtttctagccattgcacaatgcattcatggtgataaagatgatcacaaggc |
39929907 |
T |
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| Q |
407 |
atttttgtaac |
417 |
Q |
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| T |
39929908 |
atttttgtaac |
39929918 |
T |
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