View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12868_high_9 (Length: 387)
Name: NF12868_high_9
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 929878 - 929746
Alignment:
| Q |
1 |
aaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcattttgctaggtagaaatcaaattatctttgaaggaaactcaatgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
929878 |
aaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcatttttctaggtagaaatcaaattatctttgaaggaaactcaatgaat |
929779 |
T |
|
| Q |
101 |
gtaagcggcatagtgtcgcatattaaaatggtt |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
929778 |
gtaagcggcatagtgtcgcatattaaaatggtt |
929746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 929441 - 929362
Alignment:
| Q |
221 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtccttattgtgacttatttcatcgtcttactgtttcttat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
929441 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtcctaattgtgacttatttcatcgtcttactgttttttat |
929362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 295 - 364
Target Start/End: Complemental strand, 929340 - 929271
Alignment:
| Q |
295 |
tcttattcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggct |
364 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
929340 |
tcttactcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggct |
929271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 322
Target Start/End: Original strand, 1201474 - 1201614
Alignment:
| Q |
180 |
tatttgataaatacattactctggctgcactatatatatattcatgatacatttttcatatcatacaaaaacttcacaaggtccttattgtgacttattt |
279 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
1201474 |
tatttgataaattaattactctggctgaactatatccata------atacatttttcatatcatacaaaaacttcacgaggtcctgattgtgagttattg |
1201567 |
T |
|
| Q |
280 |
catcgtcttactgtt----tcttattcggactttctttaatgtttca |
322 |
Q |
| |
|
||| ||||||||||| |||||||| || | |||||||||||||| |
|
|
| T |
1201568 |
cattgtcttactgttttaatcttattcagattatctttaatgtttca |
1201614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 1201640 - 1201681
Alignment:
| Q |
323 |
gaagaccgtctaagttcggctgttgtgcccgaatgtttggct |
364 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1201640 |
gaagagcgtctaagttctgctgttgtgcccgaatgtttggct |
1201681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 929676 - 929642
Alignment:
| Q |
146 |
ggatggaatcgaggactaaaccgttaaacggttat |
180 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
929676 |
ggatggaatcgaggactaaaccgttaaactgttat |
929642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University