View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12868_low_1 (Length: 609)

Name: NF12868_low_1
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12868_low_1
NF12868_low_1
[»] chr3 (12 HSPs)
chr3 (401-605)||(13347543-13347744)
chr3 (401-602)||(13164398-13164598)
chr3 (401-593)||(13337548-13337739)
chr3 (401-599)||(13174612-13174809)
chr3 (175-396)||(13347134-13347356)
chr3 (112-387)||(13163944-13164221)
chr3 (112-359)||(13335868-13336099)
chr3 (19-101)||(13173866-13173948)
chr3 (175-359)||(13174055-13174223)
chr3 (19-101)||(13163818-13163900)
chr3 (19-101)||(13335742-13335824)
chr3 (19-101)||(13346945-13347027)
[»] scaffold0002 (6 HSPs)
scaffold0002 (401-602)||(142390-142590)
scaffold0002 (401-599)||(132179-132376)
scaffold0002 (112-387)||(142767-143044)
scaffold0002 (175-359)||(132765-132933)
scaffold0002 (19-101)||(133040-133122)
scaffold0002 (19-101)||(143088-143170)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 401 - 605
Target Start/End: Original strand, 13347543 - 13347744
Alignment:
Q  401 tttatctcagtgacaagaacaaaaatattctttcttaaaatcctattgaaaaccagtttaannnnnnnaaatcctattctttatcctggttgaaattaaa 500  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||| ||| | ||||||    
T  13347543 tttatctcaataacaagaacaaaa-tattctttcttaaaatcctattgaaaaccagtttaattttttaaaatcctattcttaatcctagttaagattaaa 13347641  T
Q  501 cttataatgtttttgaagccattgttaatttttattcttttgttgctaataggtttgtcatcggtgaggcgtgcaaagtgcatacacagagatttggttc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  13347642 cttataatgtttttgaagccattgttaatttttattcttttgttgttaataggtttgtcatcggtgaggcgtgcaaagtgcatacac--agatttggttc 13347739  T
Q  601 atctt 605  Q
    |||||    
T  13347740 atctt 13347744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 401 - 602
Target Start/End: Original strand, 13164398 - 13164598
Alignment:
Q  401 tttatctcagtgacaagaacaaaaatattctttcttaaaatcctattgaaaaccagtttaannnnnnnaaatcctattctttatcctggttgaaattaaa 500  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||| ||| | ||||||    
T  13164398 tttatctcaataacaagaacaaaa-tattctttcttaaaatcctattgaaaaccagtttaattttttaaaatcctattcttaatcctagttaagattaaa 13164496  T
Q  501 cttataatgtttttgaagccattgttaatttttattcttttgttgctaataggtttgtcatcggtgaggcgtgcaaagtgcatacacagagatttggttc 600  Q
    ||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  13164497 cttataatgttttcgaagccattgttaatttttattcttttgctgttaataggtttgtcatcggtaaggcgtgcaaagtgcattcacagagatttggttc 13164596  T
Q  601 at 602  Q
    ||    
T  13164597 at 13164598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 401 - 593
Target Start/End: Original strand, 13337548 - 13337739
Alignment:
Q  401 tttatctcagtgacaagaacaaaaatattctttcttaaaatcctattgaaaaccagtttaannnnnnnaaatcctattctttatcctggttgaaattaaa 500  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||| ||||||| ||||| ||||| ||||||    
T  13337548 tttatctttgtgacaagaacaaaa-tattctttcttaaaatcctattgaaaaccagtttaaatttttaaaatcatattcttgatcctagttgagattaaa 13337646  T
Q  501 cttataatgtttttgaagccattgttaatttttattcttttgttgctaataggtttgtcatcggtgaggcgtgcaaagtgcatacacagagat 593  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||    
T  13337647 cttataatgttttcgaagccattgttaatttttattcttttgttgttaataggtttgtcatcggtaaggcgtgcaaagtccatacacagagat 13337739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 401 - 599
Target Start/End: Original strand, 13174612 - 13174809
Alignment:
Q  401 tttatctcagtgacaagaacaaaaatattctttcttaaaatcctattgaaaaccagtttaannnnnnnaaatcctattctttatcctggttgaaattaaa 500  Q
    |||||||  |||||||||||||| | ||||||||||| |||||||||||||||||||||||       ||||| ||||||| ||||| ||||| ||||||    
T  13174612 tttatctttgtgacaagaacaaata-attctttcttataatcctattgaaaaccagtttaaatttttaaaatcatattcttgatcctagttgagattaaa 13174710  T
Q  501 cttataatgtttttgaagccattgttaatttttattcttttgttgctaataggtttgtcatcggtgaggcgtgcaaagtgcatacacagagatttggtt 599  Q
    ||||||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  13174711 cttataatgttttcgaagccatcgctaatttttattcttttgttgttaataggtttgtcatcggtaaggcgtgcaaagtccatacacagagatttggtt 13174809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 175 - 396
Target Start/End: Original strand, 13347134 - 13347356
Alignment:
Q  175 ttagaagcaaggtatgaaagtaagaagtgggagaatttgtccatcccagtcttagaaataaataacgaagtgataatatgagggaagggacgagaagaga 274  Q
    ||||||||||  ||| ||||| ||| ||||||  | ||||||||||||||||| |||||||||   |||||||||||||||||||||||| || ||||||    
T  13347134 ttagaagcaaactataaaagtcagaggtgggaacagttgtccatcccagtcttggaaataaatggggaagtgataatatgagggaagggatgaaaagaga 13347233  T
Q  275 aggaaaggaaaatttgcaatcctgtttcaggtatgagtttcttcaatgcatctatccatgaagaattttttcaactttttctgtga-tttttatgtggat 373  Q
    ||  ||||||||||| |||| ||||||| ||||||||||||||| ||||||||||||||  ||||||||||||| ||||||| ||| ||||| ||||||     
T  13347234 agtgaaggaaaatttacaattctgtttctggtatgagtttcttctatgcatctatccatatagaattttttcaattttttctttgattttttctgtggaa 13347333  T
Q  374 caattcataaaatagtcaagttc 396  Q
    |||||||||||||||||||||||    
T  13347334 caattcataaaatagtcaagttc 13347356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 112 - 387
Target Start/End: Original strand, 13163944 - 13164221
Alignment:
Q  112 tctctttcacaggacacttttccttcctctcttgagttatttagactcaggaaatgcccttcattagaagcaaggtatgaaagtaagaagtgggagaatt 211  Q
    ||||||||| | ||||||||||| ||||||||| || || |  |  || |||||||||||   ||||||||||  ||| ||||| ||| ||||||  | |    
T  13163944 tctctttcaaaagacacttttccatcctctcttaagatactgcgcatccggaaatgccctctgttagaagcaaactataaaagtcagaggtgggaacagt 13164043  T
Q  212 tgtccatcccagtcttagaaataaataacgaagtgataatatgagggaagggacgagaagagaaggaaaggaaaatttgcaatcctgtttcaggtatgag 311  Q
    |||||||||||||||| |||||||||   |||||||||||||||||||||||| || ||||||||  ||||||||||| |||| ||||||||||||||||    
T  13164044 tgtccatcccagtcttggaaataaatggggaagtgataatatgagggaagggatgaaaagagaagtgaaggaaaatttacaattctgtttcaggtatgag 13164143  T
Q  312 tttcttcaatgcatctatccatgaagaa--ttttttcaactttttctgtga-tttttatgtggatcaattcataaaata 387  Q
    ||| ||  ||||||||||||||  ||||  ||||||||||||||||| ||| ||||| |||||| ||||||||||||||    
T  13164144 ttt-ttttatgcatctatccatatagaattttttttcaactttttctttgattttttctgtggaacaattcataaaata 13164221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 112 - 359
Target Start/End: Original strand, 13335868 - 13336099
Alignment:
Q  112 tctctttcacaggacacttttccttcctctcttgagttatttagactcaggaaatgcccttcattagaagcaaggtatgaaagtaagaagtgggagaatt 211  Q
    ||||||||| | ||||||||||| ||||||||| || || |  |  || |||||||||||   ||||||||||  ||| ||||| ||| ||||||  |||    
T  13335868 tctctttcaaaagacacttttccatcctctcttaagatactgcgcatctggaaatgccctctgttagaagcaaactataaaagtcagaggtgggaacatt 13335967  T
Q  212 tgtccatcccagtcttagaaataaataacgaagtgataatatgagggaagggacgagaagagaaggaaaggaaaatttgcaatcctgtttcaggtatgag 311  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||| |     
T  13335968 tgtccatcccagtcttgaaaataaataacgaagtgataatatgagggaagggac---------------ggaaaatttgcaatcctgtttcaggtataat 13336052  T
Q  312 tttcttcaatgcatctatccatgaagaattttttcaactttttctgtg 359  Q
    | ||||  |||||||||||||||||||| || ||||| ||||||||||    
T  13336053 tctcttttatgcatctatccatgaagaa-ttgttcaattttttctgtg 13336099  T

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Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 13173866 - 13173948
Alignment:
Q  19 ctgccaatttccctcgtgtctttggatatttctaatctcggtgaaataaaatccattgatggaaatggactctgacacttatc 101  Q
    ||||||||||| || ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||    
T  13173866 ctgccaatttcacttgtgtctttgtatatttctaatctctgtgaaataaaatccattgatggaaatggactccgacacctatc 13173948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 175 - 359
Target Start/End: Original strand, 13174055 - 13174223
Alignment:
Q  175 ttagaagcaaggtatgaaagtaagaagtgggagaatttgtccatcccagtcttagaaataaataacgaagtgataatatgagggaagggacgagaagaga 274  Q
    ||||||||||  ||| ||||| ||| ||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||             
T  13174055 ttagaagcaaactataaaagtcagaggtgggaacatttgtccatcccagtcttggaaataaataacgaagtgataatatgagggaacggac--------- 13174145  T
Q  275 aggaaaggaaaatttgcaatcctgtttcaggtatgagtttcttcaatgcatctatccatgaagaattttttcaactttttctgtg 359  Q
           ||||||||| ||||||||||||||||||| | ||||  |||||||||||||||||||| || ||||| ||||||||||    
T  13174146 ------agaaaatttgtaatcctgtttcaggtatgattctcttttatgcatctatccatgaagaa-ttgttcaattttttctgtg 13174223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 13163818 - 13163900
Alignment:
Q  19 ctgccaatttccctcgtgtctttggatatttctaatctcggtgaaataaaatccattgatggaaatggactctgacacttatc 101  Q
    ||||||||||| || ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||    
T  13163818 ctgccaatttcacttgtgtctttgtatatttctaatctctgtgaaataaaatcctttgatggaaatggactccgacacctatc 13163900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 13335742 - 13335824
Alignment:
Q  19 ctgccaatttccctcgtgtctttggatatttctaatctcggtgaaataaaatccattgatggaaatggactctgacacttatc 101  Q
    ||||||||||| || |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||    
T  13335742 ctgccaatttcacttgtgtctttgagtatttctaatctctgtgaaataaaatccattgatggaaatggactccgacacctatc 13335824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 13346945 - 13347027
Alignment:
Q  19 ctgccaatttccctcgtgtctttggatatttctaatctcggtgaaataaaatccattgatggaaatggactctgacacttatc 101  Q
    ||||||||||| || |||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||| ||||    
T  13346945 ctgccaatttcacttgtgtctttggatatttctaatctctgtgaaatacaatcctttgatggaaatggactcggacacctatc 13347027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 129; Significance: 2e-66; HSPs: 6)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 401 - 602
Target Start/End: Complemental strand, 142590 - 142390
Alignment:
Q  401 tttatctcagtgacaagaacaaaaatattctttcttaaaatcctattgaaaaccagtttaannnnnnnaaatcctattctttatcctggttgaaattaaa 500  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||| ||| | ||||||    
T  142590 tttatctcaataacaagaacaaaa-tattctttcttaaaatcctattgaaaaccagtttaattttttaaaatcctattcttaatcctagttaagattaaa 142492  T
Q  501 cttataatgtttttgaagccattgttaatttttattcttttgttgctaataggtttgtcatcggtgaggcgtgcaaagtgcatacacagagatttggttc 600  Q
    ||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  142491 cttataatgttttcgaagccattgttaatttttattcttttgctgttaataggtttgtcatcggtaaggcgtgcaaagtgcattcacagagatttggttc 142392  T
Q  601 at 602  Q
    ||    
T  142391 at 142390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 401 - 599
Target Start/End: Complemental strand, 132376 - 132179
Alignment:
Q  401 tttatctcagtgacaagaacaaaaatattctttcttaaaatcctattgaaaaccagtttaannnnnnnaaatcctattctttatcctggttgaaattaaa 500  Q
    |||||||  |||||||||||||| | ||||||||||| |||||||||||||||||||||||       ||||| ||||||| ||||| ||||| ||||||    
T  132376 tttatctttgtgacaagaacaaata-attctttcttataatcctattgaaaaccagtttaaatttttaaaatcatattcttgatcctagttgagattaaa 132278  T
Q  501 cttataatgtttttgaagccattgttaatttttattcttttgttgctaataggtttgtcatcggtgaggcgtgcaaagtgcatacacagagatttggtt 599  Q
    ||||||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  132277 cttataatgttttcgaagccatcgctaatttttattcttttgttgttaataggtttgtcatcggtaaggcgtgcaaagtccatacacagagatttggtt 132179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 112 - 387
Target Start/End: Complemental strand, 143044 - 142767
Alignment:
Q  112 tctctttcacaggacacttttccttcctctcttgagttatttagactcaggaaatgcccttcattagaagcaaggtatgaaagtaagaagtgggagaatt 211  Q
    ||||||||| | ||||||||||| ||||||||| || || |  |  || |||||||||||   ||||||||||  ||| ||||| ||| ||||||  | |    
T  143044 tctctttcaaaagacacttttccatcctctcttaagatactgcgcatccggaaatgccctctgttagaagcaaactataaaagtcagaggtgggaacagt 142945  T
Q  212 tgtccatcccagtcttagaaataaataacgaagtgataatatgagggaagggacgagaagagaaggaaaggaaaatttgcaatcctgtttcaggtatgag 311  Q
    |||||||||||||||| |||||||||   |||||||||||||||||||||||| || ||||||||  ||||||||||| |||| ||||||||||||||||    
T  142944 tgtccatcccagtcttggaaataaatggggaagtgataatatgagggaagggatgaaaagagaagtgaaggaaaatttacaattctgtttcaggtatgag 142845  T
Q  312 tttcttcaatgcatctatccatgaagaa--ttttttcaactttttctgtga-tttttatgtggatcaattcataaaata 387  Q
    ||| ||  ||||||||||||||  ||||  ||||||||||||||||| ||| ||||| |||||| ||||||||||||||    
T  142844 ttt-ttttatgcatctatccatatagaattttttttcaactttttctttgattttttctgtggaacaattcataaaata 142767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 175 - 359
Target Start/End: Complemental strand, 132933 - 132765
Alignment:
Q  175 ttagaagcaaggtatgaaagtaagaagtgggagaatttgtccatcccagtcttagaaataaataacgaagtgataatatgagggaagggacgagaagaga 274  Q
    ||||||||||  ||| ||||| ||| ||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||             
T  132933 ttagaagcaaactataaaagtcagaggtgggaacatttgtccatcccagtcttggaaataaataacgaagtgataatatgagggaacggac--------- 132843  T
Q  275 aggaaaggaaaatttgcaatcctgtttcaggtatgagtttcttcaatgcatctatccatgaagaattttttcaactttttctgtg 359  Q
           ||||||||| ||||||||||||||||||| | ||||  |||||||||||||||||||| || ||||| ||||||||||    
T  132842 ------agaaaatttgtaatcctgtttcaggtatgattctcttttatgcatctatccatgaagaa-ttgttcaattttttctgtg 132765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 133122 - 133040
Alignment:
Q  19 ctgccaatttccctcgtgtctttggatatttctaatctcggtgaaataaaatccattgatggaaatggactctgacacttatc 101  Q
    ||||||||||| || ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||    
T  133122 ctgccaatttcacttgtgtctttgtatatttctaatctctgtgaaataaaatccattgatggaaatggactccgacacctatc 133040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 143170 - 143088
Alignment:
Q  19 ctgccaatttccctcgtgtctttggatatttctaatctcggtgaaataaaatccattgatggaaatggactctgacacttatc 101  Q
    ||||||||||| || ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||    
T  143170 ctgccaatttcacttgtgtctttgtatatttctaatctctgtgaaataaaatcctttgatggaaatggactccgacacctatc 143088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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