View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_low_10 (Length: 387)
Name: NF12868_low_10
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 26721772 - 26722138
Alignment:
| Q |
17 |
cctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnctcattctctta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |
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| T |
26721772 |
cctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaaaaacaaactcacttttttttatctcattctcttc |
26721871 |
T |
|
| Q |
117 |
ttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26721872 |
ttacttttaatttcattttattctgtaataatgataacgagattgtttctatctacactttataggttctacaaatatggttcaaagaagaaaaaccatg |
26721971 |
T |
|
| Q |
217 |
agccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
26721972 |
agccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaac |
26722071 |
T |
|
| Q |
317 |
tccaattctcataatcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactc |
383 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722072 |
tccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactc |
26722138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 383
Target Start/End: Complemental strand, 45117137 - 45116784
Alignment:
| Q |
17 |
cctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnctcattctctta |
116 |
Q |
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||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
45117137 |
cctttcaaggaatgtaagaggctcatcactctctttttaagagcatgctcccaaagtgattgggaacatcaaattcacttttttttatctcattctcttc |
45117038 |
T |
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| Q |
117 |
ttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45117037 |
ttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatg |
45116938 |
T |
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| Q |
217 |
agccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaac |
316 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
45116937 |
agccttggattatgatt-------------tgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaac |
45116851 |
T |
|
| Q |
317 |
tccaattctcataatcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactc |
383 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45116850 |
tccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactc |
45116784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 2987240 - 2987594
Alignment:
| Q |
17 |
cctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnn-ctcattctctt |
115 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
2987240 |
cctttcaaggaatgtaagaggcttatcactctctttttaagagcatgttcccaaagtgattgggaacatcaaattcactttttttttatctcattctctt |
2987339 |
T |
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| Q |
116 |
attacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2987340 |
cttacttttaatttcattttattctgtaataatgataatgagattgtttctatctatactttataggttctgcaaatatggttcaaagaagaaaaaccat |
2987439 |
T |
|
| Q |
216 |
gagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaa |
315 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||| |
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| T |
2987440 |
gagccttggattatg-------------atttgagaaaatggtttaatactctatttgttgtgtaatttccatcaatgttctcactactcaaagacaaaa |
2987526 |
T |
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| Q |
316 |
ctccaattctcataatcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactc |
383 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2987527 |
ctccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactc |
2987594 |
T |
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