View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_low_11 (Length: 346)
Name: NF12868_low_11
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 37289587 - 37289307
Alignment:
| Q |
13 |
cagagagacaaaataaacacatgcagataaaatacacaaaatagagaagatcagtaagaatagcagaacctaaaaataccaaaccaatcgtttcctttaa |
112 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
37289587 |
cagagacacaaaataaacacatgcagataaaatacacaaaatagagaagatcagtaagaatagcagaacctaaaaataccaaatcaatcatttcctttgg |
37289488 |
T |
|
| Q |
113 |
ctcgttggcttgcaaatcggcctatctgatctctgaaattattaccaaacaggtttggcaagcgtattgtaccatgagaaaacaacaaaacgaaatatca |
212 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||| |||| |
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| T |
37289487 |
ctcgttggcttgcaaatcggcctatctgatctccaaaatcattaccaaacaagtttgacaagcgtattgcaccctgagaaaacaacaaaacgaaacatca |
37289388 |
T |
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| Q |
213 |
ataatcatgagcaagaagatagcccgttc-nnnnnnnnngaaagaagcaattattgtaccttcaaaacaggaatggacgca |
292 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37289387 |
ataatcatgagcaagaagatagcccgttcaaaaaaaaaaaaaagaagcaattattgtaccttcaaaacaggaatggacgca |
37289307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 13927748 - 13927521
Alignment:
| Q |
13 |
cagagagacaaaataaacacatgcagataaaatacacaaaatagagaagatcagtaagaatagcagaacctaaaaataccaaaccaatcgtttcctttaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13927748 |
cagagagacaaaataaacacatgcagataaaatacacaaaatagagaagatcagtaagaatagcataacctaaaaataccaaaccaatcgtttcctttgg |
13927649 |
T |
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| Q |
113 |
ctcgttggcttgcaaatcggcctatctgatctctgaaattattaccaaacaggtttggcaagcgtattgtaccatgagaaaacaacaaaacgaaatatca |
212 |
Q |
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| T |
13927648 |
ctagttggcttgcaaattggtctatctgatctccgaaatcattaccaaacaggtttggcaagtgtatggcaccctgagaaaacaacaaaacgaaatatca |
13927549 |
T |
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| Q |
213 |
ataatcatgagcaagaagatagcccgtt |
240 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
13927548 |
ataatcatgagcaagaagatagcccgtt |
13927521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 50568487 - 50568556
Alignment:
| Q |
21 |
caaaataaacacatgcagataaaatacacaaaatagagaagatcagtaagaatagcagaacctaaaaata |
90 |
Q |
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|||| |||||||||||| || | |||||||||| ||||||||| | |||||||| ||||||||||||| |
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| T |
50568487 |
caaagtaaacacatgcatatcatatacacaaaagagagaagatgatcaagaatagaggaacctaaaaata |
50568556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 6148047 - 6148011
Alignment:
| Q |
253 |
aagaagcaattattgtaccttcaaaacaggaatggac |
289 |
Q |
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|||||||||||||||| ||||| |||||||||||||| |
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| T |
6148047 |
aagaagcaattattgtgccttcgaaacaggaatggac |
6148011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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