View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_low_13 (Length: 335)
Name: NF12868_low_13
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_low_13 |
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| [»] scaffold0005 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 68 - 239
Target Start/End: Complemental strand, 7174777 - 7174607
Alignment:
| Q |
68 |
caatgaaaatattaaatgcttattgagtttgaatttttctcttaatcattaaactaaatatgaataatatacaatattgcaagaatgtagactgtaatgt |
167 |
Q |
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| T |
7174777 |
caatgaaaatattaaatgcttattatttttgaatatttcccttaatcgttaaactaaatataaataatatacaattttgcaagaatgtagactgtaatgt |
7174678 |
T |
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| Q |
168 |
tagtttttctattcacccccatatattaatgtaga-ccacactaaagaagaaaaatacttcgcttgattcttc |
239 |
Q |
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| T |
7174677 |
gag--tttctattcatccccatatattaacattcatgcacactaaagaacaaaaatgcttcgcttgattcttc |
7174607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 7171287 - 7171217
Alignment:
| Q |
256 |
aagaaaactgagggaaacgagaacaatcttgaagctggtaataattgaattcatctttagcctattcatct |
326 |
Q |
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| T |
7171287 |
aagaaaactgagggaaacgagaacaatcttgaagctggtaataattgaattcatttttagcctattcatct |
7171217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 14804271 - 14804352
Alignment:
| Q |
62 |
tttcagcaatgaaaatattaaatgcttattgagtttgaatttttctcttaatcattaaactaaatatgaataatatacaata |
143 |
Q |
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| T |
14804271 |
tttctgcaatgaaaatattaaatgcttattgtttttgaatttgacccttaatcgttaaactaattgtaaataatatacaata |
14804352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 14804595 - 14804627
Alignment:
| Q |
135 |
tatacaatattgcaagaatgtagactgtaatgt |
167 |
Q |
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| T |
14804595 |
tatacaatattgcaagaatgtagactgtcatgt |
14804627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 35456 - 35375
Alignment:
| Q |
62 |
tttcagcaatgaaaatattaaatgcttattgagtttgaatttttctcttaatcattaaactaaatatgaataatatacaata |
143 |
Q |
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| T |
35456 |
tttctgcaatgaaaatattaaatgcttattgtttttgaatttgacccttaatcgttaaactaattgtaaataatatacaata |
35375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 35132 - 35100
Alignment:
| Q |
135 |
tatacaatattgcaagaatgtagactgtaatgt |
167 |
Q |
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| T |
35132 |
tatacaatattgcaagaatgtagactgtcatgt |
35100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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