View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_low_18 (Length: 317)
Name: NF12868_low_18
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 38411061 - 38411336
Alignment:
| Q |
16 |
atgaaatgtcattttattagtaaccaaatgttattttctattctccctccaaaccaaaacttgtcatctctcttcacctttcatcagaaatgcaaacgat |
115 |
Q |
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| T |
38411061 |
atgaaatgtcattttattagtaaccaaatgttattttctattctccctccaaaccaaaactt------------cacctttcatcagaaatgcaaacgat |
38411148 |
T |
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| Q |
116 |
cgccgttcttttgcatcgtttacctta----gtttctctactggtcctacctatgtcatcgtgttgtcgcgccctcgtatccccatcagcttttgtcatt |
211 |
Q |
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| T |
38411149 |
cgccgttcttttgcatcgtttaccttaattagtttctctactggtcctacccatgtcttcgtgttgtcgtgccctcgtatccccatcagcttttgtcatt |
38411248 |
T |
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| Q |
212 |
caaattaagggaaatgaccaatctataagtaacggaagaaaagttaagggcttctcatcatgcttttctatattataggaggatatca |
299 |
Q |
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| T |
38411249 |
caaattaagggaaatgaccaatctataagtaacggaagaaaagttaagggcttctcatcatgcttttctatattatagggggatatca |
38411336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 35274701 - 35274649
Alignment:
| Q |
246 |
gaagaaaagttaagggcttctcatcatgcttttctatattataggaggatatca |
299 |
Q |
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| T |
35274701 |
gaagaaaa-ttaagggcttctcatcatgcttttctatattataggaggatatca |
35274649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 1884709 - 1884768
Alignment:
| Q |
23 |
gtcattttattagtaaccaaatgttattttctattctccctccaaaccaaaacttgtcat |
82 |
Q |
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|||||||||||||||||||| |||| ||| | ||||||| ||||||| ||||||| |||| |
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| T |
1884709 |
gtcattttattagtaaccaagtgttgtttcccattctccatccaaacaaaaacttttcat |
1884768 |
T |
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