View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12868_low_20 (Length: 281)
Name: NF12868_low_20
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 34858467 - 34858717
Alignment:
| Q |
12 |
agagatgtgaaactgcattgttcttaaggattaactcgagtaaaatctgtgaactattcgnnnnnnntgacccactatgaggaaaaggtgtagtagtggg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34858467 |
agagatgtgaaactgcattgttcttaaggattaactcgagtaaaatctgtgaactattcgaaaaaaatgacccactatgaggaaaaggtgtagtagtggg |
34858566 |
T |
|
| Q |
112 |
gttagaccaggtcaataaaataacaaaaggttaaaatagaaataaggttctaataatgagatcagatggagacaatattttgtctatacagaacaaagtc |
211 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34858567 |
gttagaccgagccaataaaataacaaaaggttaaaatagaaataaggttctaataatgagatcagatggagacaatattttgtctatacagaacaaagtc |
34858666 |
T |
|
| Q |
212 |
aaacttttattttgacagggaccaagtcaaaaacttatcacaggtataata |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34858667 |
aaacttttattttgacagggaccaagtcaaaaacttatcacaggtataata |
34858717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University