View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12868_low_22 (Length: 278)

Name: NF12868_low_22
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12868_low_22
NF12868_low_22
[»] chr3 (36 HSPs)
chr3 (17-140)||(2671754-2671876)
chr3 (34-140)||(7167051-7167156)
chr3 (33-140)||(40372979-40373085)
chr3 (32-140)||(8739247-8739354)
chr3 (32-140)||(9091485-9091592)
chr3 (34-119)||(22173368-22173456)
chr3 (34-140)||(28504040-28504145)
chr3 (71-140)||(8477171-8477240)
chr3 (17-140)||(1305761-1305881)
chr3 (34-119)||(18656256-18656343)
chr3 (17-140)||(32143133-32143253)
chr3 (17-138)||(1309668-1309786)
chr3 (31-142)||(30709962-30710070)
chr3 (24-119)||(16264180-16264272)
chr3 (86-140)||(27026754-27026809)
chr3 (34-103)||(32475326-32475397)
chr3 (34-103)||(32480184-32480255)
chr3 (34-99)||(2677261-2677327)
chr3 (34-99)||(10207779-10207845)
chr3 (86-140)||(27038100-27038154)
chr3 (86-119)||(1417712-1417745)
chr3 (31-124)||(36028931-36029021)
chr3 (71-119)||(3716211-3716259)
chr3 (72-140)||(18554497-18554563)
chr3 (86-140)||(35925292-35925346)
chr3 (34-99)||(2673105-2673171)
chr3 (86-140)||(6794935-6794988)
chr3 (34-99)||(8512061-8512127)
chr3 (34-99)||(8516941-8517007)
chr3 (34-95)||(24967957-24968019)
chr3 (29-123)||(27452786-27452877)
chr3 (33-119)||(47649571-47649655)
chr3 (86-119)||(3323786-3323819)
chr3 (67-144)||(27986649-27986724)
chr3 (90-145)||(39040218-39040274)
chr3 (25-113)||(40844489-40844574)
[»] chr2 (25 HSPs)
chr2 (141-259)||(32802475-32802593)
chr2 (17-140)||(9296569-9296691)
chr2 (24-140)||(11099102-11099217)
chr2 (24-140)||(14291295-14291410)
chr2 (24-140)||(25403443-25403556)
chr2 (35-119)||(44312798-44312885)
chr2 (17-140)||(3491563-3491683)
chr2 (34-119)||(19344243-19344332)
chr2 (34-119)||(19349101-19349190)
chr2 (24-140)||(25398305-25398418)
chr2 (34-119)||(32246607-32246696)
chr2 (34-119)||(39812161-39812250)
chr2 (33-140)||(10445628-10445732)
chr2 (33-140)||(23078655-23078759)
chr2 (31-118)||(34682515-34682600)
chr2 (31-140)||(42039850-42039956)
chr2 (86-140)||(16940442-16940496)
chr2 (86-140)||(17011107-17011161)
chr2 (86-119)||(28259410-28259443)
chr2 (71-119)||(8039890-8039938)
chr2 (89-140)||(13569137-13569189)
chr2 (71-125)||(10707472-10707525)
chr2 (86-124)||(36757994-36758032)
chr2 (86-119)||(32178425-32178458)
chr2 (89-140)||(8390389-8390441)
[»] chr7 (27 HSPs)
chr7 (24-143)||(20357722-20357840)
chr7 (32-140)||(2057765-2057873)
chr7 (17-140)||(21645818-21645938)
chr7 (34-140)||(4866528-4866641)
chr7 (35-140)||(12396710-12396822)
chr7 (17-142)||(21639618-21639740)
chr7 (35-119)||(12406155-12406242)
chr7 (65-140)||(1533656-1533730)
chr7 (34-119)||(24024501-24024589)
chr7 (17-140)||(18413453-18413573)
chr7 (35-119)||(21812413-21812501)
chr7 (17-140)||(18408576-18408696)
chr7 (34-140)||(9190191-9190294)
chr7 (34-119)||(31109756-31109844)
chr7 (34-103)||(16879914-16879985)
chr7 (34-103)||(16884770-16884841)
chr7 (34-103)||(24261496-24261567)
chr7 (34-103)||(24266375-24266446)
chr7 (34-140)||(9185346-9185449)
chr7 (31-140)||(49091472-49091578)
chr7 (17-144)||(2479144-2479269)
chr7 (86-141)||(35960622-35960678)
chr7 (33-119)||(44848868-44848951)
chr7 (31-119)||(29159633-29159719)
chr7 (86-140)||(46516544-46516597)
chr7 (86-119)||(4796903-4796936)
chr7 (86-119)||(47263511-47263544)
[»] chr8 (29 HSPs)
chr8 (24-141)||(36979183-36979299)
chr8 (23-142)||(10689317-10689435)
chr8 (24-140)||(4760251-4760366)
chr8 (154-259)||(37391903-37392008)
chr8 (33-140)||(18853352-18853457)
chr8 (39-140)||(18870749-18870849)
chr8 (33-140)||(30655448-30655553)
chr8 (35-140)||(6311100-6311208)
chr8 (17-140)||(1262118-1262238)
chr8 (35-140)||(7290101-7290210)
chr8 (24-140)||(33037981-33038096)
chr8 (17-140)||(26287713-26287833)
chr8 (17-140)||(26312964-26313084)
chr8 (17-140)||(31071395-31071516)
chr8 (34-103)||(10684437-10684508)
chr8 (34-119)||(39784997-39785086)
chr8 (71-140)||(19752612-19752681)
chr8 (67-140)||(26300958-26301030)
chr8 (25-99)||(25328443-25328517)
chr8 (86-140)||(19175990-19176044)
chr8 (34-99)||(35745237-35745303)
chr8 (86-119)||(7412168-7412201)
chr8 (71-119)||(6127049-6127097)
chr8 (71-118)||(26403449-26403496)
chr8 (86-140)||(4455838-4455892)
chr8 (25-119)||(9765995-9766086)
chr8 (86-140)||(28307368-28307420)
chr8 (86-119)||(5702716-5702749)
chr8 (87-140)||(10015389-10015443)
[»] scaffold0248 (1 HSPs)
scaffold0248 (141-256)||(3653-3768)
[»] chr1 (27 HSPs)
chr1 (141-256)||(1537524-1537639)
chr1 (141-256)||(17767571-17767686)
chr1 (34-140)||(24202950-24203054)
chr1 (33-140)||(19359028-19359132)
chr1 (33-107)||(24787549-24787625)
chr1 (67-140)||(19361650-19361722)
chr1 (67-140)||(19380290-19380362)
chr1 (71-119)||(27104587-27104635)
chr1 (86-125)||(21536802-21536841)
chr1 (36-98)||(41398084-41398147)
chr1 (35-119)||(25445264-25445352)
chr1 (86-140)||(29651620-29651674)
chr1 (86-119)||(37069599-37069632)
chr1 (44-119)||(41386571-41386650)
chr1 (71-119)||(9024049-9024096)
chr1 (94-141)||(3281519-3281566)
chr1 (33-140)||(40816916-40817020)
chr1 (86-140)||(775483-775536)
chr1 (35-119)||(39445322-39445410)
chr1 (34-99)||(43988639-43988705)
chr1 (35-119)||(44024047-44024135)
chr1 (86-119)||(9476093-9476126)
chr1 (31-136)||(16124698-16124799)
chr1 (86-119)||(26645130-26645163)
chr1 (71-140)||(32889249-32889317)
chr1 (86-119)||(47099056-47099089)
chr1 (71-119)||(47704156-47704204)
[»] chr6 (20 HSPs)
chr6 (24-140)||(30125969-30126084)
chr6 (17-140)||(5674936-5675057)
chr6 (34-119)||(11856795-11856883)
chr6 (35-119)||(22010871-22010958)
chr6 (34-140)||(31936398-31936501)
chr6 (34-119)||(14737750-14737838)
chr6 (34-119)||(14742609-14742697)
chr6 (35-119)||(6438324-6438411)
chr6 (31-143)||(31086643-31086752)
chr6 (31-140)||(22708829-22708935)
chr6 (34-106)||(28155744-28155817)
chr6 (34-119)||(28184325-28184416)
chr6 (34-99)||(5343326-5343392)
chr6 (34-99)||(6005263-6005329)
chr6 (17-119)||(21355869-21355968)
chr6 (34-99)||(33330620-33330686)
chr6 (86-142)||(5572829-5572884)
chr6 (31-119)||(5757657-5757742)
chr6 (86-140)||(5017705-5017759)
chr6 (34-99)||(33336117-33336183)
[»] chr4 (25 HSPs)
chr4 (24-144)||(29760445-29760563)
chr4 (24-140)||(24741748-24741862)
chr4 (35-140)||(51520258-51520367)
chr4 (35-140)||(56146886-56146995)
chr4 (34-119)||(9224580-9224668)
chr4 (34-119)||(9229367-9229455)
chr4 (17-140)||(28468693-28468813)
chr4 (34-119)||(45347991-45348079)
chr4 (34-119)||(45357470-45357558)
chr4 (34-119)||(3813846-3813935)
chr4 (34-119)||(5732486-5732573)
chr4 (183-237)||(23911043-23911097)
chr4 (86-140)||(16624242-16624297)
chr4 (33-140)||(31985815-31985919)
chr4 (35-119)||(18855549-18855637)
chr4 (31-141)||(25862203-25862309)
chr4 (71-119)||(24333641-24333689)
chr4 (89-140)||(8689714-8689765)
chr4 (86-129)||(16630913-16630956)
chr4 (33-119)||(3796704-3796788)
chr4 (90-140)||(5397069-5397119)
chr4 (86-140)||(34496056-34496108)
chr4 (86-140)||(38152673-38152727)
chr4 (33-119)||(54867013-54867096)
chr4 (86-142)||(10047188-10047243)
[»] scaffold0007 (1 HSPs)
scaffold0007 (141-256)||(273073-273188)
[»] scaffold0978 (1 HSPs)
scaffold0978 (33-140)||(421-527)
[»] chr5 (33 HSPs)
chr5 (35-140)||(1457336-1457445)
chr5 (37-141)||(27444770-27444878)
chr5 (37-140)||(27449615-27449722)
chr5 (35-142)||(43592078-43592189)
chr5 (34-141)||(24135658-24135763)
chr5 (17-140)||(35387474-35387594)
chr5 (35-140)||(43598525-43598634)
chr5 (35-140)||(43604017-43604126)
chr5 (35-140)||(43609509-43609618)
chr5 (24-141)||(38191982-38192096)
chr5 (24-141)||(38219207-38219321)
chr5 (77-140)||(31180079-31180142)
chr5 (34-126)||(30631224-30631318)
chr5 (17-140)||(15464343-15464463)
chr5 (34-119)||(15044512-15044598)
chr5 (34-103)||(37556797-37556867)
chr5 (34-103)||(37561619-37561689)
chr5 (31-119)||(17004140-17004226)
chr5 (216-259)||(31783958-31784001)
chr5 (34-99)||(2785221-2785287)
chr5 (31-140)||(14520039-14520145)
chr5 (35-119)||(28807749-28807837)
chr5 (34-99)||(31397166-31397232)
chr5 (34-99)||(31402023-31402089)
chr5 (34-99)||(33791162-33791228)
chr5 (86-140)||(42126640-42126693)
chr5 (85-142)||(213789-213846)
chr5 (71-119)||(3880133-3880181)
chr5 (33-140)||(19588557-19588660)
chr5 (33-119)||(11182017-11182100)
chr5 (34-99)||(33768025-33768091)
chr5 (34-140)||(42127593-42127695)
chr5 (86-119)||(10281693-10281726)
[»] scaffold0135 (1 HSPs)
scaffold0135 (34-119)||(35235-35323)
[»] scaffold0188 (2 HSPs)
scaffold0188 (32-141)||(24226-24332)
scaffold0188 (32-140)||(18133-18238)
[»] scaffold0355 (1 HSPs)
scaffold0355 (34-119)||(9813-9902)
[»] scaffold0197 (2 HSPs)
scaffold0197 (34-103)||(14482-14553)
scaffold0197 (34-99)||(19338-19404)
[»] scaffold0009 (1 HSPs)
scaffold0009 (34-103)||(182137-182208)
[»] scaffold0087 (2 HSPs)
scaffold0087 (31-119)||(44140-44225)
scaffold0087 (31-140)||(37013-37119)
[»] scaffold0184 (1 HSPs)
scaffold0184 (65-140)||(29703-29777)
[»] scaffold0078 (1 HSPs)
scaffold0078 (65-140)||(43067-43141)
[»] scaffold1805 (1 HSPs)
scaffold1805 (31-140)||(1217-1324)
[»] scaffold0464 (1 HSPs)
scaffold0464 (35-119)||(185-273)
[»] scaffold0036 (1 HSPs)
scaffold0036 (86-140)||(85495-85549)
[»] scaffold0028 (1 HSPs)
scaffold0028 (34-99)||(149129-149195)
[»] scaffold0127 (1 HSPs)
scaffold0127 (44-119)||(34132-34211)
[»] scaffold0148 (1 HSPs)
scaffold0148 (86-119)||(10558-10591)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 2671754 - 2671876
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2671754 cactagactagggctgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttg-ttttcattggtg 2671852  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||||||||||||||||||    
T  2671853 tgagttttaaccggattcacaaca 2671876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 7167156 - 7167051
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggatt 133  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7167156 ttttgttgttgtt-gcttggaaaccattttgctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttcaaccggatt 7167058  T
Q  134 cacaaca 140  Q
    |||||||    
T  7167057 cacaaca 7167051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 40372979 - 40373085
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggat 132  Q
    |||||| ||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  40372979 tttttgatgttgtttgcttggaaaccattttgcccattgattaccactatctcttgctccacacacctttg-ttttcattggtgtgagttttaaccggat 40373077  T
Q  133 tcacaaca 140  Q
    ||||||||    
T  40373078 tcacaaca 40373085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 8739247 - 8739354
Alignment:
Q  32 gtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgga 131  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||||| |    
T  8739247 gtttttgttgttatttgcttggaaaccatttgactcatagattaccactatttcttgctccacacatctttg-ttttcattggtgtgagtctcaaccgaa 8739345  T
Q  132 ttcacaaca 140  Q
    |||||||||    
T  8739346 ttcacaaca 8739354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 9091485 - 9091592
Alignment:
Q  32 gtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgga 131  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||||| |    
T  9091485 gtttttgttgttatttgcttggaaaccatttgactcatagattaccactatttcttgctccacacatctttg-ttttcattggtgtgagtctcaaccgaa 9091583  T
Q  132 ttcacaaca 140  Q
    |||||||||    
T  9091584 ttcacaaca 9091592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 22173368 - 22173456
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  22173368 ttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 22173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 28504040 - 28504145
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggatt 133  Q
    ||||||||||||| ||||||| |||||||  ||||||||||| ||||| || |||||||||||||| ||||| ||||||||||||||||   ||||||||    
T  28504040 ttttgttgttgtt-gcttggaaaccatttttctcatagattatcactaccttttgctccacacatcattgttattcattggtgtgagttaagaccggatt 28504138  T
Q  134 cacaaca 140  Q
    |||||||    
T  28504139 cacaaca 28504145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 8477240 - 8477171
Alignment:
Q  71 gattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttta-accggattcacaaca 140  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  8477240 gattaccactatcttttgctccacacatctttg-ttttcattggtgtgagttttataccggattcacaaca 8477171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 1305881 - 1305761
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| |||||||||||||||| ||||||||||  |||  | ||||||||||||||   | |||||||||||||||||||||  ||||||||    
T  1305881 cactagactagggctgtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttctttttgctccacacatctttgttta-cattggtg 1305785  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||| ||| ||||||||||    
T  1305784 tgagttttatccgaattcacaaca 1305761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 18656343 - 18656256
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacatctttgt-ttttcattggtgtga 119  Q
    ||||||||||||| ||||||||||||||||  ||||| ||||||||| ||| ||||||||||||||| |||| |||||||||||||||    
T  18656343 ttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattgtattttcattggtgtga 18656256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 32143253 - 32143133
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||  |||||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||| ||| ||||||||    
T  32143253 cactagactaggtctgtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttg-tttacattggtg 32143157  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||| ||| ||||||||||    
T  32143156 tgagttttatccgaattcacaaca 32143133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 1309786 - 1309668
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| |||||||||||||||| ||||| ||||  |||  | ||||||||||||||  || |||||||||||||||||| ||| ||||||||    
T  1309786 cactagactagggctgtttttgttgttgtt-gcttgaagacacttta-cacatagattaccacttccttttgctccacacatctttg-tttacattggtg 1309690  T
Q  117 tgagttttaaccggattcacaa 138  Q
    ||||||||| ||| ||||||||    
T  1309689 tgagttttatccgaattcacaa 1309668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 30709962 - 30710070
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgg 130  Q
    |||||||||||||||| ||||||||||  |||  | ||| ||||||||||  || |||||||||||||||||||| ||||||||||||| ||||| | |     
T  30709962 tgtttttgttgttgtt-gcttggagacacttta-cacattgattaccacttcct-ttgctccacacatctttgttattcattggtgtgatttttaccgga 30710058  T
Q  131 attcacaacaca 142  Q
    ||||||||||||    
T  30710059 attcacaacaca 30710070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 16264272 - 16264180
Alignment:
Q  24 ctagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||| |||||||||||||||||| |||||||||  |||  | ||| |||||||||| ||| ||||||||||| |||||||| |||||||||||||    
T  16264272 ctaggattgtttttgttgttgttt-cttggagacacttta-cacattgattaccact-tctgttgctccacacgtctttgttattcattggtgtga 16264180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 27026809 - 27026754
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccgg-attcacaaca 140  Q
    |||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||    
T  27026809 ttgctccacacatctttgttattcattggtgtgattttttaccggaattcacaaca 27026754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 32475397 - 32475326
Alignment:
Q  34 ttttgttgttgttt-gcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg 103  Q
    ||||||||||| || | |||||| |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  32475397 ttttgttgttgattagtttggaggccatttgcactcatagattacctctatctcttgctccacacatctttg 32475326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 32480255 - 32480184
Alignment:
Q  34 ttttgttgttgttt-gcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg 103  Q
    ||||||||||| || | |||||| |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  32480255 ttttgttgttgattagtttggaggccatttgcactcatagattacctctatctcttgctccacacatctttg 32480184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 2677261 - 2677327
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| | ||||| |||||||||||||||    
T  2677261 ttttgttgttgttagcttggaggccatttgctctcatagattatctctatcacttgctccacacatc 2677327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 10207845 - 10207779
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| | ||||| |||||||||||||||    
T  10207845 ttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 10207779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 27038154 - 27038100
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||||| ||| ||||||||||||| |||| |||| ||||||||||    
T  27038154 ttgctccacacatcttagttattcattggtgtgattttttaccgaattcacaaca 27038100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 1417712 - 1417745
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||||||||||||||||||||||||||||||||    
T  1417712 ttgctccacacatctttgtttttcattggtgtga 1417745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 36029021 - 36028931
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttt 124  Q
    |||||||||||||||| ||||||||||  |||  | ||| |||||||||| ||  |||||||||||||||||||| ||||||||||||| ||||    
T  36029021 tgtttttgttgttgtt-gcttggagacacttta-cacattgattaccact-tcatttgctccacacatctttgttattcattggtgtgattttt 36028931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 3716211 - 3716259
Alignment:
Q  71 gattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||||||||  || |||||||||||||||||||| |||||||||||||    
T  3716211 gattaccacttccttttgctccacacatctttgttattcattggtgtga 3716259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 18554497 - 18554563
Alignment:
Q  72 attaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    ||||||||| ||| |||||||||||||||||||| ||||||||||||| ||||  ||| ||||||||||    
T  18554497 attaccactttct-ttgctccacacatctttgttattcattggtgtga-ttttgtccgaattcacaaca 18554563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 35925346 - 35925292
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccgg-attcacaaca 140  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||    
T  35925346 ttgctccacatatctttgtttttcattggtgtg-gtttttaccggaattcacaaca 35925292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 2673105 - 2673171
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||| ||||||   ||||||||||| | ||||| |||||||||||||||    
T  2673105 ttttgttgttgttagcttggaggccatttactctcatagattatctctatcacttgctccacacatc 2673171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 6794935 - 6794988
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||| ||||||||||||||||||| ||||  ||| ||||||||||    
T  6794935 ttgctccacacatcgttgtttttcattggtgtga-ttttgtccgaattcacaaca 6794988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 8512127 - 8512061
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||  |||||||  ||||||||||| | ||||| |||||||||||||||    
T  8512127 ttttgttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatc 8512061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 8517007 - 8516941
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||  |||||||  ||||||||||| | ||||| |||||||||||||||    
T  8517007 ttttgttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatc 8516941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 24968019 - 24967957
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccaca 95  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| | ||||| |||||||||||    
T  24968019 ttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccaca 24967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 27452877 - 27452786
Alignment:
Q  29 gttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 123  Q
    |||||| ||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||| ||| ||||||||| |||||    
T  27452877 gttgttgttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttg-tttacattggtgttagttt 27452786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 47649655 - 47649571
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||| ||||||||||  |||  || || ||||||||||  || ||| |||||||||||||||| |||||||||||||    
T  47649655 tttttgttgttgtt-gcttggagacactttatct-attgattaccacttccttttgttccacacatctttgttattcattggtgtga 47649571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 3323786 - 3323819
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||||||||| |||||||||||||    
T  3323786 ttgctccacacatctttgttattcattggtgtga 3323819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 27986649 - 27986724
Alignment:
Q  67 catagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaacacata 144  Q
    ||||||||||||||  || |||||||| ||||||||| ||| |||||||||||| |||  ||| ||||||||||||||    
T  27986649 catagattaccacttccttttgctccatacatctttg-tttacattggtgtgag-tttgtccgaattcacaacacata 27986724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 39040218 - 39040274
Alignment:
Q  90 tccacacatctttgtttttcattggtgtgagttttaaccgg-attcacaacacataa 145  Q
    ||||||||||||| || || |||||||||| |||| ||||| |||||||||||||||    
T  39040218 tccacacatctttattatttattggtgtgattttttaccggaattcacaacacataa 39040274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 40844574 - 40844489
Alignment:
Q  25 tagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattg 113  Q
    |||| ||||||||||||||||| ||||||||||  |||  || || |||||||||| ||| || ||||||||||||||||| |||||||    
T  40844574 taggtttgtttttgttgttgtt-gcttggagacactttatct-attgattaccact-tcttttactccacacatctttgttattcattg 40844489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 141 - 259
Target Start/End: Complemental strand, 32802593 - 32802475
Alignment:
Q  141 cataatatagtacaaatcaagccaatgatttggcaagcaagaatagtacggccaacagaataattggaaagcaagaaaacaatcaaaattatgtgaacaa 240  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  32802593 cataatatactacaaatcaagccaatgatttggcaagcaagaatagtacggctaacagaataattggcaagcaagaaaacaatcaaaattatgtgaacaa 32802494  T
Q  241 gttcatgaaatgtaactat 259  Q
    | |||||||||||||||||    
T  32802493 ggtcatgaaatgtaactat 32802475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 9296569 - 9296691
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  9296569 cactagactagggctgtttttgttgttgtttgcttggaaaccattttgctcatagattaccactaccttttgctccacacatctttg-ttttcattggtg 9296667  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||||||||||||||||||    
T  9296668 tgagttttaaccggattcacaaca 9296691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 11099102 - 11099217
Alignment:
Q  24 ctagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 123  Q
    |||||| |||||||||||||||| ||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11099102 ctagggctgtttttgttgttgtt-gcttggaaaccattttgttcattgattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 11099200  T
Q  124 taaccggattcacaaca 140  Q
     ||||||||||||||||    
T  11099201 caaccggattcacaaca 11099217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 14291410 - 14291295
Alignment:
Q  24 ctagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 123  Q
    |||||| |||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  14291410 ctagggctgtttttgttgttgtttgcttggaaaccattttgcccattgattaccactatctcttgctccacacacctttg-ttttcattggtgtgagttt 14291312  T
Q  124 taaccggattcacaaca 140  Q
    |||||||||||||||||    
T  14291311 taaccggattcacaaca 14291295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 25403556 - 25403443
Alignment:
Q  24 ctagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 123  Q
    |||||| |||||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||||||  |||||||||||||||    
T  25403556 ctagggctgtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttgttta-cattggtgtgagttt 25403460  T
Q  124 taaccggattcacaaca 140  Q
     ||||||||||||||||    
T  25403459 caaccggattcacaaca 25403443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 44312798 - 44312885
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||| |||||  ||||||||||||||    
T  44312798 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 44312885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 3491683 - 3491563
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| |||||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||| ||| ||||||||    
T  3491683 cactagactagggctgtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttg-tttacattggtg 3491587  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||| ||| ||||||||||    
T  3491586 tgagttttatccgaattcacaaca 3491563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 19344332 - 19344243
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||| |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||   | ||||||||||||||    
T  19344332 ttttgttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19344243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 19349190 - 19349101
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||| |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||   | ||||||||||||||    
T  19349190 ttttgttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19349101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 25398418 - 25398305
Alignment:
Q  24 ctagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 123  Q
    |||||| |||||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||| ||| |||||||||||||||    
T  25398418 ctagggctgtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttg-tttacattggtgtgagttt 25398322  T
Q  124 taaccggattcacaaca 140  Q
     |||| |||||||||||    
T  25398321 caaccagattcacaaca 25398305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 32246696 - 32246607
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||||||| ||||||||||||||| |||   | ||||||||||||||    
T  32246696 ttttgttgttgttagcttggagaccatttgttctcatagattaccactatcacttgctccacacatcattggtttatttcattggtgtga 32246607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 39812161 - 39812250
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||| ||||||||||||||||  ||||| ||||| ||||||| |||||||||||||||||||   | ||||||||||||||    
T  39812161 ttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttcattggtgtga 39812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 10445628 - 10445732
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggat 132  Q
    |||||||||||||| ||||||||||  |||  | ||| ||||||||||  || |||||||||||||||||||||||||||||||||| ||||  ||| ||    
T  10445628 tttttgttgttgtt-gcttggagacactttatc-cattgattaccacttccttttgctccacacatctttgtttttcattggtgtga-ttttgtccgaat 10445724  T
Q  133 tcacaaca 140  Q
    ||||||||    
T  10445725 tcacaaca 10445732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 23078655 - 23078759
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggat 132  Q
    |||||||||||||| ||||||||||  |||  | ||| ||||||||||  || |||||||||||||||||||||||||||||||||| ||||| | | ||    
T  23078655 tttttgttgttgtt-gcttggagacacttta-cacattgattaccacttcct-ttgctccacacatctttgtttttcattggtgtgatttttaccggaat 23078751  T
Q  133 tcacaaca 140  Q
    ||||||||    
T  23078752 tcacaaca 23078759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 34682515 - 34682600
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtg 118  Q
    |||||||||||||||| ||||||||||  |||  || || |||||||||| ||| |||||||||||||||||||| ||||||||||||    
T  34682515 tgtttttgttgttgtt-gcttggagacactttatct-attgattaccactttcttttgctccacacatctttgttattcattggtgtg 34682600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 42039850 - 42039956
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgg 130  Q
    |||||||||||||||| ||||||||||  |||  | ||| ||||||||||  || |||||||||||||||||||| ||||||||||||| ||||| | |     
T  42039850 tgtttttgttgttgtt-gcttggagacacttta-cacattgattaccacttcct-ttgctccacacatctttgttattcattggtgtgatttttaccgga 42039946  T
Q  131 attcacaaca 140  Q
    ||||||||||    
T  42039947 attcacaaca 42039956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 16940442 - 16940496
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||||||||| ||||||||||||| |||  |||| ||||||||||    
T  16940442 ttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 16940496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 17011107 - 17011161
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||||||||| ||||||||||||| |||  |||| ||||||||||    
T  17011107 ttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 17011161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 28259410 - 28259443
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||||||||||||||||||||||||||||||||    
T  28259410 ttgctccacacatctttgtttttcattggtgtga 28259443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 8039938 - 8039890
Alignment:
Q  71 gattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||||||||  || |||||||||||||||||||| |||||||||||||    
T  8039938 gattaccacttccttttgctccacacatctttgttattcattggtgtga 8039890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 13569189 - 13569137
Alignment:
Q  89 ctccacacatctttgtttttcattggtgtgagttttaaccgg-attcacaaca 140  Q
    ||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||    
T  13569189 ctccacacatctttgttattcattggtgtgattttttaccggaattcacaaca 13569137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 10707472 - 10707525
Alignment:
Q  71 gattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttta 125  Q
    |||||||||| ||| |||||||||||||||||||| ||||| ||||||| |||||    
T  10707472 gattaccact-tcttttgctccacacatctttgttattcatgggtgtgattttta 10707525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 36757994 - 36758032
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagtttt 124  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  36757994 ttgctccacacatctttgttattcattggtgtgattttt 36758032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 32178458 - 32178425
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||||||||| |||||||||||||    
T  32178458 ttgctccacacatctttgttattcattggtgtga 32178425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 8390389 - 8390441
Alignment:
Q  89 ctccacacatctttgtttttcattggtgtgagttttaaccgg-attcacaaca 140  Q
    |||||||||||||| |||||||||||||||| |||  ||||| ||||||||||    
T  8390389 ctccacacatctttatttttcattggtgtgattttgtaccggaattcacaaca 8390441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 20357722 - 20357840
Alignment:
Q  24 ctagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 123  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20357722 ctagggctgtttttgttgttgttagcttggagaccatttggctcatagattaccactatctcttgctccacacatctttg-ttttcattggtgtgagttt 20357820  T
Q  124 taaccggattcacaacacat 143  Q
     |||||||||||||||||||    
T  20357821 caaccggattcacaacacat 20357840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 2057873 - 2057765
Alignment:
Q  32 gtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgga 131  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2057873 gtttttgttgttgtttgcttggaaaccatttgactcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttcaaccgga 2057774  T
Q  132 ttcacaaca 140  Q
    |||||||||    
T  2057773 ttcacaaca 2057765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 21645938 - 21645818
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| |||||||||||||||| ||||||||||  |||  ||||||||||||||||  || |||||||||||||||||||||  ||||||||    
T  21645938 cactagactagggctgtttttgttgttgtt-gcttggagacacttta-ctcatagattaccactcccttttgctccacacatctttgttta-cattggtg 21645842  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||||||||||||||||||    
T  21645841 tgagttttaaccggattcacaaca 21645818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 4866641 - 4866528
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttggc-tcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga--gtttt--aa 126  Q
    |||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||  |||||  ||    
T  4866641 ttttgttgttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgaaggtttttgaa 4866542  T
Q  127 ccggattcacaaca 140  Q
    ||||||||||||||    
T  4866541 ccggattcacaaca 4866528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 12396822 - 12396710
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga--gtttt--aac 127  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||  |||||  |||    
T  12396822 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgaaggtttttgaac 12396723  T
Q  128 cggattcacaaca 140  Q
    |||||||||||||    
T  12396722 cggattcacaaca 12396710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 21639740 - 21639618
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| |||||||||||||||| ||||||||||  |||  ||||||||||||||||  || |||||||||||||||||| ||| ||||| ||    
T  21639740 cactagactagggctgtttttgttgttgtt-gcttggagacacttta-ctcatagattaccactcccttttgctccacacatctttg-tttacattgatg 21639644  T
Q  117 tgagttttaaccggattcacaacaca 142  Q
    |||||||||| |||||||||||||||    
T  21639643 tgagttttaatcggattcacaacaca 21639618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 12406242 - 12406155
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  12406242 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 12406155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 1533656 - 1533730
Alignment:
Q  65 ctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    ||||| |||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1533656 ctcattgattaccactatattttgctccacacatctttgtttt-cattggtgtgagttttaaccggattcacaaca 1533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 24024501 - 24024589
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||| |||||  ||||||||||||||    
T  24024501 ttttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 24024589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 18413573 - 18413453
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| |||||||||||||||| ||||||||||  |||  | ||||||||||||||  || ||||||| |||||||||||||  ||||||||    
T  18413573 cactagactagggctgtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctcctcacatctttgttta-cattggtg 18413477  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||| ||| ||||||||||    
T  18413476 tgagttttatccgaattcacaaca 18413453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 21812413 - 21812501
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    |||||||||||| |||||||  |||||||  |||||||||||||||||||||||||||||||||||||||   | ||||||||||||||    
T  21812413 tttgttgttgttagcttggaagccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 21812501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 18408696 - 18408576
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| ||||| || |||||||||||||||| || |||||||  |||  | ||||||||||||||  || |||||||||||||||||| ||| ||||||||    
T  18408696 cactagactacggctgtttttgttgttgtt-gcgtggagacacttta-cacatagattaccacttccttttgctccacacatctttg-tttacattggtg 18408600  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||| ||| ||||||||||    
T  18408599 tgagttttatccgaattcacaaca 18408576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 9190191 - 9190294
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggatt 133  Q
    ||||||||||||| ||||||||||  |||  | ||| ||||||||||  || |||||||||||||||||||||||||||||||||| |||| |||| |||    
T  9190191 ttttgttgttgtt-gcttggagacacttta-cacattgattaccacttccttttgctccacacatctttgtttttcattggtgtga-ttttgaccgaatt 9190287  T
Q  134 cacaaca 140  Q
    |||||||    
T  9190288 cacaaca 9190294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 31109756 - 31109844
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    ||||||||||||| ||||||||||||||||  ||||| ||||| ||||||| |||||| |||||||| |||||  ||||||||||||||    
T  31109756 ttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctgcacacatcattgtttatttcattggtgtga 31109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 16879985 - 16879914
Alignment:
Q  34 ttttgttgttgttt-gcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg 103  Q
    ||||||||||| || |||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  16879985 ttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttg 16879914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 16884841 - 16884770
Alignment:
Q  34 ttttgttgttgttt-gcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg 103  Q
    ||||||||||| || |||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  16884841 ttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttg 16884770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 24261496 - 24261567
Alignment:
Q  34 ttttgttgttgttt-gcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg 103  Q
    ||||||||||| || |||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  24261496 ttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttg 24261567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 24266375 - 24266446
Alignment:
Q  34 ttttgttgttgttt-gcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg 103  Q
    ||||||||||| || |||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  24266375 ttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttg 24266446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 9185346 - 9185449
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggatt 133  Q
    ||||||||||||| ||||||||||  |||  | ||| ||||||||||  || ||||||||||||||||||||||||||| |||||| |||| |||| |||    
T  9185346 ttttgttgttgtt-gcttggagacacttta-cacattgattaccacttccttttgctccacacatctttgtttttcattagtgtga-ttttgaccgaatt 9185442  T
Q  134 cacaaca 140  Q
    |||||||    
T  9185443 cacaaca 9185449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 49091578 - 49091472
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgg 130  Q
    |||||||||||||||| ||||||||||  |||  || || ||||||||||  || |||||||||||||||||||| ||||||||||||| |||  ||||     
T  49091578 tgtttttgttgttgtt-gcttggagacactttatct-attgattaccacttcct-ttgctccacacatctttgttattcattggtgtgattttgtaccga 49091482  T
Q  131 attcacaaca 140  Q
    ||||||||||    
T  49091481 attcacaaca 49091472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 2479269 - 2479144
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||  |||||||||||||||| |||| |||||  |||  | ||| ||||||||||  || |||||||||||||||||||||||||||||||    
T  2479269 cactagactaggtctgtttttgttgttgtt-gcttagagacacttta-cacattgattaccacttcct-ttgctccacacatctttgtttttcattggtg 2479173  T
Q  117 tgagttttaaccgg-attcacaacacata 144  Q
    ||| | | |||||| | ||||||||||||    
T  2479172 tgattatcaaccggaactcacaacacata 2479144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 35960678 - 35960622
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga-gttttaaccggattcacaacac 141  Q
    ||||||||||||||||||||||||||||||||||  |||| |||| |||||||||||    
T  35960678 ttgctccacacatctttgtttttcattggtgtgattttttgaccgaattcacaacac 35960622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 44848868 - 44848951
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||| ||||||||||  |||| | ||| ||||| ||||| || |||||||||||||| |||||||||||||||||||    
T  44848868 tttttgttgttgtt-gcttggagacactttg-cacattgattagcactacct-ttgctccacacatccttgtttttcattggtgtga 44848951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 29159719 - 29159633
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||||| ||||||||||  |||  || || ||||||||||  |  |||||||||||||||||||| |||||||||||||    
T  29159719 tgtttttgttgttgtt-gcttggagacactttatct-attgattaccacttccctttgctccacacatctttgttattcattggtgtga 29159633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 46516544 - 46516597
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||||||||| ||||||||||||| ||||  ||| ||||||||||    
T  46516544 ttgctccacacatctttgttattcattggtgtga-ttttgtccgaattcacaaca 46516597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 4796903 - 4796936
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||||||||| |||||||||||||    
T  4796903 ttgctccacacatctttgttattcattggtgtga 4796936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 47263544 - 47263511
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||||||| ||||||||||||||||||||||||    
T  47263544 ttgctccacgcatctttgtttttcattggtgtga 47263511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 36979299 - 36979183
Alignment:
Q  24 ctagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 123  Q
    |||||| |||||||||||||||| ||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36979299 ctagggctgtttttgttgttgtt-gcttggaaaccattttgttcattgattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 36979201  T
Q  124 taaccggattcacaacac 141  Q
     |||||||||||||||||    
T  36979200 caaccggattcacaacac 36979183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 10689317 - 10689435
Alignment:
Q  23 actagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagtt 122  Q
    |||||||||||||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10689317 actagggttgtttttgttgttgtt-gcttggaaaccattagactcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagtt 10689415  T
Q  123 ttaaccggattcacaacaca 142  Q
    | ||||| |  |||||||||    
T  10689416 tcaaccgaaaacacaacaca 10689435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 4760251 - 4760366
Alignment:
Q  24 ctagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 123  Q
    |||||| |||||||||||||||| ||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  4760251 ctagggctgtttttgttgttgtt-gcttggaaaccattttgctcattgattaccactatctctagctccacacatctttgtttttcattgatgtgagttt 4760349  T
Q  124 taaccggattcacaaca 140  Q
     ||||||||||||||||    
T  4760350 caaccggattcacaaca 4760366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 37392008 - 37391903
Alignment:
Q  154 aaatcaagccaatgatttggcaagcaagaatagtacggccaacagaataattggaaagcaagaaaacaatcaaaattatgtgaacaagttcatgaaatgt 253  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||| |||||| ||||    
T  37392008 aaatcaagtcaatgatttggcaagcaagaatagtacagccaacagaataactggcaagcaagaaaacaatcaaaattatgtaaacaagatcatgacatgt 37391909  T
Q  254 aactat 259  Q
    ||||||    
T  37391908 aactat 37391903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 18853352 - 18853457
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggat 132  Q
    ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||| ||||||||    
T  18853352 ttttttttgttgtttgcttggaaaccatttgactcatagattaccactatctcttgctccacacatctttg--tttcgttggtgtgagtttcaaccggat 18853449  T
Q  133 tcacaaca 140  Q
    ||||||||    
T  18853450 tcacaaca 18853457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 18870749 - 18870849
Alignment:
Q  39 ttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaa 138  Q
    |||||||||||||||| |||||||  |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  18870749 ttgttgtttgcttggaaaccatttaactcatagattaccattatctcttgctccacacatctttg-ttttcattggtgtgagtttcaaccggattcacaa 18870847  T
Q  139 ca 140  Q
    ||    
T  18870848 ca 18870849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 30655553 - 30655448
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggat 132  Q
    |||||||||||||| ||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  30655553 tttttgttgttgtt-gcttggaaaccattttgttcattgattaccactatctcttgctccacacatctttg-ttttcattggtgtgagtttcaaccggat 30655456  T
Q  133 tcacaaca 140  Q
    ||||||||    
T  30655455 tcacaaca 30655448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 6311208 - 6311100
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagttttaaccgga 131  Q
    |||||||||||||||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||| |||||||    
T  6311208 tttgttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccgga 6311109  T
Q  132 ttcacaaca 140  Q
    |||||||||    
T  6311108 ttcacaaca 6311100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 1262118 - 1262238
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| |||||||||||||||| ||||||||||  |||  ||||||||||||||||  || || ||||||||||||||||||| ||||||||    
T  1262118 cactagactagggctgtttttgttgttgtt-gcttggagacacttta-ctcatagattaccactcccttttactccacacatctttgtttt-cattggtg 1262214  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||||||||||||||||||    
T  1262215 tgagttttaaccggattcacaaca 1262238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 7290101 - 7290210
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagttt-taaccgg 130  Q
    |||||||||||||| ||||||||||||||  ||||| |||||||||||||||||||||||||||||  ||||  ||||||||||||||||||  ||||||    
T  7290101 tttgttgttgtttgtttggagaccatttgttctcattgattaccactatctcttgctccacacatcaatgtttatttcattggtgtgagtttggaaccgg 7290200  T
Q  131 attcacaaca 140  Q
    ||||||||||    
T  7290201 attcacaaca 7290210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 33037981 - 33038096
Alignment:
Q  24 ctagggttgttt-ttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagtt 122  Q
    |||||| ||||| ||||||||||| ||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||| ||||||||||||| || |    
T  33037981 ctagggctgtttattgttgttgtt-gcttggaaaccattttgttcattgattaccactatctcttgctccacacatctttg-ttttcattggtgttagat 33038078  T
Q  123 ttaaccggattcacaaca 140  Q
    ||||||| || |||||||    
T  33038079 ttaaccgcatccacaaca 33038096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 26287833 - 26287713
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| |||||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||| ||| ||||||||    
T  26287833 cactagactagggctgtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttg-tttacattggtg 26287737  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||| ||| ||||||||||    
T  26287736 tgagttttatccgaattcacaaca 26287713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 26313084 - 26312964
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| |||||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||| ||| ||||||||    
T  26313084 cactagactagggctgtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttg-tttacattggtg 26312988  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||| ||| ||||||||||    
T  26312987 tgagttttatccgaattcacaaca 26312964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 31071395 - 31071516
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| |||||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||| ||| ||||||||    
T  31071395 cactagactagggctgtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttg-tttacattggtg 31071491  T
Q  117 tgag-ttttaaccggattcacaaca 140  Q
    |||| ||||| ||| ||||||||||    
T  31071492 tgagtttttatccgaattcacaaca 31071516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 10684437 - 10684508
Alignment:
Q  34 ttttgttgttgttt-gcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg 103  Q
    ||||||||||| || |||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  10684437 ttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttg 10684508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 39784997 - 39785086
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    |||||||||| || ||||||||||||||||  ||||| ||||| ||||||| |||||||||||||||||||   | ||||||||||||||    
T  39784997 ttttgttgttattggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttcattggtgtga 39785086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 19752612 - 19752681
Alignment:
Q  71 gattaccactatctcttgctccacacatctttg-tttttcattggtgtgagttttaaccggattcacaaca 140  Q
    ||||||||||  || |||||||||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  19752612 gattaccacttccttttgctccacacatctttgttttttcattggtgtga-tttttaccggattcacaaca 19752681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 26301030 - 26300958
Alignment:
Q  67 catagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    ||||||||||||||  || ||||||||| |||||||||||  ||||||||||||||||| ||| ||||||||||    
T  26301030 catagattaccacttccttttgctccacgcatctttgttta-cattggtgtgagttttatccgaattcacaaca 26300958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 25328443 - 25328517
Alignment:
Q  25 tagggttgtttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacatc 99  Q
    |||||||||||| ||||||||| ||||||||||||||||  ||||| ||||| ||||||| |||||||| ||||||    
T  25328443 tagggttgtttt-gttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccgcacatc 25328517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 19175990 - 19176044
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||||||||| ||||||||||||| ||||| | | ||||||||||    
T  19175990 ttgctccacacatctttgttattcattggtgtgatttttaccagaattcacaaca 19176044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 35745303 - 35745237
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| | ||||| |||||||||||||||    
T  35745303 ttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 35745237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 7412201 - 7412168
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||||||||||||||||||||||||||||||||    
T  7412201 ttgctccacacatctttgtttttcattggtgtga 7412168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 6127097 - 6127049
Alignment:
Q  71 gattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||||||||  || |||||||||||||||||||| |||||||||||||    
T  6127097 gattaccacttccttttgctccacacatctttgttattcattggtgtga 6127049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 26403449 - 26403496
Alignment:
Q  71 gattaccactatctcttgctccacacatctttgtttttcattggtgtg 118  Q
    ||||||||||  || |||||||||||||||||||| ||||||||||||    
T  26403449 gattaccacttccttttgctccacacatctttgttattcattggtgtg 26403496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 4455892 - 4455838
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||||||| | ||||||||||||| ||||||  | ||||||||||    
T  4455892 ttgctccacacatctttgatattcattggtgtgatttttaagggaattcacaaca 4455838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 9765995 - 9766086
Alignment:
Q  25 tagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    |||| ||||||||||||||||| ||||||||||  |||  || || ||||| ||||  || |||||||||||||||||||| |||||||||||||    
T  9765995 taggtttgtttttgttgttgtt-gcttggagacactttatct-attgattatcacttcct-ttgctccacacatctttgttattcattggtgtga 9766086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 28307420 - 28307368
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||    
T  28307420 ttgctccacacatctttg-ttttcattggtgtga-ttttatccgaattcacaaca 28307368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 5702716 - 5702749
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||||||||| |||||||||||||    
T  5702716 ttgctccacacatctttgttattcattggtgtga 5702749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 10015389 - 10015443
Alignment:
Q  87 tgctccacacatctttgtttttcattggtgtgagttttaa--ccggattcacaaca 140  Q
    ||||||||||||||||| ||||||||||||| ||||||||  ||| ||||||||||    
T  10015389 tgctccacacatctttg-ttttcattggtgtaagttttaaatccgaattcacaaca 10015443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 3768 - 3653
Alignment:
Q  141 cataatatagtacaaatcaagccaatgatttggcaagcaagaatagtacggccaacagaataattggaaagcaagaaaacaatcaaaattatgtgaacaa 240  Q
    ||||||||| |||||| ||||||||||||||||||||||||||  |||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  3768 cataatatactacaaaccaagccaatgatttggcaagcaagaactgtacggccatgagaataattggcaagcaagaaaacaatcaaaattatgtgaacaa 3669  T
Q  241 gttcatgaaatgtaac 256  Q
    | ||||||||||||||    
T  3668 ggtcatgaaatgtaac 3653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 1537639 - 1537524
Alignment:
Q  141 cataatatagtacaaatcaagccaatgatttggcaagcaagaatagtacggccaacagaataattggaaagcaagaaaacaatcaaaattatgtgaacaa 240  Q
    ||||||||| |||||| ||||||||||||||||||||||||||  |||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  1537639 cataatatactacaaaccaagccaatgatttggcaagcaagaactgtacggccatgagaataattggcaagcaagaaaacaatcaaaattatgtgaacaa 1537540  T
Q  241 gttcatgaaatgtaac 256  Q
    | ||||||||||||||    
T  1537539 ggtcatgaaatgtaac 1537524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 17767686 - 17767571
Alignment:
Q  141 cataatatagtacaaatcaagccaatgatttggcaagcaagaatagtacggccaacagaataattggaaagcaagaaaacaatcaaaattatgtgaacaa 240  Q
    ||||||||| |||||| ||||||||||||||||||||||||||  |||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  17767686 cataatatactacaaaccaagccaatgatttggcaagcaagaactgtacggccatgagaataattggcaagcaagaaaacaatcaaaattatgtgaacaa 17767587  T
Q  241 gttcatgaaatgtaac 256  Q
    | ||||||||||||||    
T  17767586 ggtcatgaaatgtaac 17767571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 24202950 - 24203054
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggatt 133  Q
    ||||||||||||||||||||||||  |||  | ||||||||||||||  || |||||||||||||||||||||| |||||||||||||||||||||||||    
T  24202950 ttttgttgttgtttgcttggagacacttta-cacatagattaccactcccttttgctccacacatctttgtttt-cattggtgtgagttttaaccggatt 24203047  T
Q  134 cacaaca 140  Q
    |||||||    
T  24203048 cacaaca 24203054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 19359028 - 19359132
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggat 132  Q
    |||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||||||  ||||||||||||||||||||||||    
T  19359028 tttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttgttta-cattggtgtgagttttaaccggat 19359124  T
Q  133 tcacaaca 140  Q
    ||||||||    
T  19359125 tcacaaca 19359132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 24787549 - 24787625
Alignment:
Q  33 tttttgttgttgtt--tgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttt 107  Q
    ||||||||||||||  |||||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  24787549 tttttgttgttgttgttgcttggaaaccattttgctcatttattaccactatctcttgctccacacatctttgtttt 24787625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 19361650 - 19361722
Alignment:
Q  67 catagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    ||||||||||||||  || |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||    
T  19361650 catagattaccacttccttttgctccacacatctttg-tttacattggtgtgagttttaaccagattcacaaca 19361722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 19380290 - 19380362
Alignment:
Q  67 catagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    ||||||||||||||  || |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||    
T  19380290 catagattaccacttccttttgctccacacatctttg-tttacattggtgtgagttttaaccagattcacaaca 19380362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 27104587 - 27104635
Alignment:
Q  71 gattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||||||||  || ||||||||||||||||||||||||||||||||||    
T  27104587 gattaccacttccttttgctccacacatctttgtttttcattggtgtga 27104635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 21536802 - 21536841
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagtttta 125  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  21536802 ttgctccacacatctttgtttttcattggtgtgattttta 21536841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 41398147 - 41398084
Alignment:
Q  36 ttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacat 98  Q
    ||||||||||||||||||||||||| ||  ||||| ||||| ||||||| ||||||||||||||    
T  41398147 ttgttgttgtttgcttggagaccatatgttctcattgattatcactatcacttgctccacacat 41398084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 25445264 - 25445352
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||||||||||  |||||||  ||||| ||||| ||||||| ||||||||||||||| |||   | ||||||||||||||    
T  25445264 tttgttgttgtttgcttggaagccatttgttctcattgattatcactatcgcttgctccacacatcattggtttatttcattggtgtga 25445352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 29651674 - 29651620
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||||||||| ||||||||||||| ||||  ||| ||||||||||    
T  29651674 ttgctccacacatctttgttattcattggtgtgatttttgtccgaattcacaaca 29651620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 37069632 - 37069599
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||||||||||||||||||||||||||||||||    
T  37069632 ttgctccacacatctttgtttttcattggtgtga 37069599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 41386650 - 41386571
Alignment:
Q  44 gtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||||||||||  ||||| ||||| ||||||| ||||||||||||||| |||   | ||||||||||||||    
T  41386650 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 41386571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 9024049 - 9024096
Alignment:
Q  71 gattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  9024049 gattaccactttctct-gctccacacttctttgtttttcattggtgtga 9024096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 3281566 - 3281519
Alignment:
Q  94 cacatctttgtttttcattggtgtgagttttaaccggattcacaacac 141  Q
    |||||||||||| ||||||||||||| ||||||| | |||||||||||    
T  3281566 cacatctttgttattcattggtgtgatttttaacggaattcacaacac 3281519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 40816916 - 40817020
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggat 132  Q
    |||||||||||||| ||||||||||  |||  || || ||||||||||  || |||||||||||||||||||| ||||||||||||  ||||  ||| ||    
T  40816916 tttttgttgttgtt-gcttggagacactttatct-attgattaccacttcct-ttgctccacacatctttgttattcattggtgtgttttttgtccgaat 40817012  T
Q  133 tcacaaca 140  Q
    ||||||||    
T  40817013 tcacaaca 40817020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 775536 - 775483
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||||||||| ||||||||||||| ||||  ||| ||||||||||    
T  775536 ttgctccacacatctttgttattcattggtgtga-ttttgtccgaattcacaaca 775483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 39445410 - 39445322
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||||||||||  |||||||  | ||| ||||| ||||||| ||||||||||||||| |||   | ||||||||||||||    
T  39445410 tttgttgttgtttgcttggaagccatttgttcacattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 39445322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 43988639 - 43988705
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||  |||||||  ||||||||||| | ||||| |||||||||||||||    
T  43988639 ttttgttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatc 43988705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 44024047 - 44024135
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||||||||||  |||||||  ||||| ||||| |||||||  |||||||||||||| |||   | ||||||||||||||    
T  44024047 tttgttgttgtttgcttggaagccatttgttctcattgattatcactatcagttgctccacacatcattggtttatttcattggtgtga 44024135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 9476126 - 9476093
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||| |||||||||||||||||||||||||||    
T  9476126 ttgctctacacatctttgtttttcattggtgtga 9476093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 16124698 - 16124799
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgg 130  Q
    |||||||||||||||| ||||||| || ||||   |||| ||||||||||  || ||||| |||||||||||||| ||||||||||||| ||||  ||||    
T  16124698 tgtttttgttgttgtt-gcttggacac-attttattcattgattaccacttcct-ttgcttcacacatctttgttattcattggtgtga-ttttgtccgg 16124793  T
Q  131 attcac 136  Q
    ||||||    
T  16124794 attcac 16124799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 26645130 - 26645163
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||||||||| |||||||||||||    
T  26645130 ttgctccacacatctttgttattcattggtgtga 26645163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 32889317 - 32889249
Alignment:
Q  71 gattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    ||||| |||| ||| |||||||||||||||||| ||||||||||| ||| ||||   |||||||||||||    
T  32889317 gattatcactttcttttgctccacacatctttg-ttttcattggtatgatttttgtacggattcacaaca 32889249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 47099056 - 47099089
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||||||||| |||||||||||||    
T  47099056 ttgctccacacatctttgttattcattggtgtga 47099089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 47704156 - 47704204
Alignment:
Q  71 gattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||||||||  || |||||||||||||||||||| ||||||| |||||    
T  47704156 gattaccacttccttttgctccacacatctttgttattcattgatgtga 47704204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 30125969 - 30126084
Alignment:
Q  24 ctagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 123  Q
    |||||| |||||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||    
T  30125969 ctagggctgtttttgttgtagttagcttggagaccatttggctcatagattatcactacctcttgctccacacatctttg-ttttcattggtgtgatttt 30126067  T
Q  124 taaccggattcacaaca 140  Q
     ||||||||||||||||    
T  30126068 caaccggattcacaaca 30126084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 5674936 - 5675057
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| || ||||||||||||| ||||||  | | |||  ||| | |||||||||||||| |||||||||||||||||||||| ||||||||    
T  5674936 cactagactagggctggttttgttgttgtt-gcttgggaaactttttactctttgattaccactatcttttgctccacacatctttgtttt-cattggtg 5675033  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||||||||||||||||||    
T  5675034 tgagttttaaccggattcacaaca 5675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 11856883 - 11856795
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  11856883 ttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 11856795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 22010871 - 22010958
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||| |||||  ||||||||||||||    
T  22010871 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 22010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 31936501 - 31936398
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggatt 133  Q
    ||||||||||||| ||||||||||  |||  | ||| ||||||||||  || |||||||||||||||||||||||||||||||||| |||||||||||||    
T  31936501 ttttgttgttgtt-gcttggagacacttta-cacattgattaccacttccttttgctccacacatctttgtttttcattggtgtga-ttttaaccggatt 31936405  T
Q  134 cacaaca 140  Q
    |||||||    
T  31936404 cacaaca 31936398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 14737750 - 14737838
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    ||||||||||||||||||||||||||||||  ||||| ||||| ||||||| ||||||||||||||| |||||  ||||||||||||||    
T  14737750 ttttgttgttgtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttcattggtgtga 14737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 14742609 - 14742697
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    |||||||||||| |||||||||||||||||  ||||| ||||| ||||||| ||||||||||||||| |||||  ||||||||||||||    
T  14742609 ttttgttgttgtatgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttcattggtgtga 14742697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 6438411 - 6438324
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    ||||||||||||||||||||  ||||| |  ||||| ||||||||||||| ||||||||||||||| |||||  ||||||||||||||    
T  6438411 tttgttgttgtttgcttggaagccattggttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 6438324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 31086643 - 31086752
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgg 130  Q
    ||||||||||||| |||||||||||||  |||  | ||| ||||||||||  || |||||||||||||||||||| ||||||||||||| |||  ||||     
T  31086643 tgtttttgttgtt-tttgcttggagacactttatc-cattgattaccacttcct-ttgctccacacatctttgttcttcattggtgtgattttgtaccga 31086739  T
Q  131 attcacaacacat 143  Q
    |||||||||||||    
T  31086740 attcacaacacat 31086752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 22708935 - 22708829
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgg 130  Q
    |||||||||||||||| ||||||||||  |||  | ||||||||||||||  |  |||| | |||||||||||||| | |||||||||||||||| ||||    
T  22708935 tgtttttgttgttgtt-gcttggagacacttta-cacatagattaccactcccctttgcactacacatctttgtttat-attggtgtgagttttatccgg 22708839  T
Q  131 attcacaaca 140  Q
    ||||||||||    
T  22708838 attcacaaca 22708829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 28155744 - 28155817
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgttt 106  Q
    ||||||||||||| ||||| ||||||||||  ||||| ||||| ||||||| ||||||||||||||| ||||||    
T  28155744 ttttgttgttgttagcttgaagaccatttgctctcattgattatcactatcacttgctccacacatcattgttt 28155817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 28184416 - 28184325
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg---ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    |||||||||||||||||||||||||||||     ||||| ||||| ||||||| ||||||||||||||| |||   | ||||||||||||||    
T  28184416 ttttgttgttgtttgcttggagaccatttttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 28184325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 5343392 - 5343326
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| | ||||| |||||||||||||||    
T  5343392 ttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 5343326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 6005329 - 6005263
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| | ||||| |||||||||||||||    
T  6005329 ttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 6005263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 21355968 - 21355869
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||  |||||||||||||||| ||||| ||||  |||  | ||| ||||||||||  || |||||||||||||||||||||||||||||||    
T  21355968 cactagactaggtctgtttttgttgttgtt-gcttgaagacacttta-cacattgattaccacttcct-ttgctccacacatctttgtttttcattggtg 21355872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 33330620 - 33330686
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| | ||||| |||||||||||||||    
T  33330620 ttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 33330686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 5572829 - 5572884
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaacaca 142  Q
    |||||||||||||||||||| ||||||||||||| ||||  ||| ||||||||||||    
T  5572829 ttgctccacacatctttgttattcattggtgtga-ttttgtccgaattcacaacaca 5572884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 5757657 - 5757742
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||||| ||||||||||  |||  | ||| ||||||||||  || ||||||||||| ||||||||||||||||||||||    
T  5757657 tgtttttgttgttgtt-gcttggagacacttta-cacattgattaccacttcct-ttgctccacacttctttgtttttcattggtgtga 5757742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 5017705 - 5017759
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||||||||| |||||| |||||| ||||| | | ||||||||||    
T  5017705 ttgctccacacatctttgttattcattagtgtgatttttaccggaattcacaaca 5017759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 33336117 - 33336183
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| | |||||| |||||||  ||||||||||| | ||||| |||||||||||||||    
T  33336117 ttttgttgttgttagtttggaggccatttgcactcatagattatctctatcacttgctccacacatc 33336183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 29760563 - 29760445
Alignment:
Q  24 ctagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 123  Q
    ||||||||||||| ||||||||| ||||||| ||||||| | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29760563 ctagggttgtttt-gttgttgtt-gcttggaaaccattttgtttattgattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 29760466  T
Q  124 taaccggattcacaacacata 144  Q
     ||||||||||||||||||||    
T  29760465 caaccggattcacaacacata 29760445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 24741862 - 24741748
Alignment:
Q  24 ctagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 123  Q
    |||||| |||||||||||||||| ||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24741862 ctagggctgtttttgttgttgtt-gcttggaaaccattttgttcattgattaccactatctcttgctccacacatctttg-ttttcattggtgtgagttt 24741765  T
Q  124 taaccggattcacaaca 140  Q
     ||||||||||||||||    
T  24741764 caaccggattcacaaca 24741748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 51520367 - 51520258
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagttt-taaccgg 130  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||||||  ||||||    
T  51520367 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccgg 51520268  T
Q  131 attcacaaca 140  Q
    ||||||||||    
T  51520267 attcacaaca 51520258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 56146886 - 56146995
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagttt-taaccgg 130  Q
    ||||||||||||||||||||||||| |||  ||||| ||||||||||||||||||||||||||||| |||||  |||||||||||||| |||  ||||||    
T  56146886 tttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgaatttggaaccgg 56146985  T
Q  131 attcacaaca 140  Q
    ||||||||||    
T  56146986 attcacaaca 56146995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 9224580 - 9224668
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  9224580 ttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 9224668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 9229367 - 9229455
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  9229367 ttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 9229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 28468693 - 28468813
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||| |||||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||| ||| ||||||||    
T  28468693 cactagactagggctgtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttg-tttacattggtg 28468789  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||| ||| ||||||||||    
T  28468790 tgagttttatccgaattcacaaca 28468813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 45347991 - 45348079
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    ||||||||||||| ||||| ||||||||||  ||||||||||||||||||| ||||||||||||||| |||||  ||||||||||||||    
T  45347991 ttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattgtttatttcattggtgtga 45348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 45357470 - 45357558
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    ||||||||||||| ||||| ||||||||||  ||||||||||||||||||| ||||||||||||||| |||||  ||||||||||||||    
T  45357470 ttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattgtttatttcattggtgtga 45357558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 3813935 - 3813846
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||| |||   | ||||||||||||||    
T  3813935 ttttgttgttgtttgcttggagaccatttgctctcattgattaccactatcacttgctccacacatcattggtttatttcattggtgtga 3813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 5732573 - 5732486
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacatctttgt-ttttcattggtgtga 119  Q
    ||||||||||||| ||||||||||||||||  ||||| ||||||||| ||| ||||||||||||||| |||| |||||||||||||||    
T  5732573 ttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattgtattttcattggtgtga 5732486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 23911043 - 23911097
Alignment:
Q  183 atagtacggccaacagaataattggaaagcaagaaaacaatcaaaattatgtgaa 237  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||    
T  23911043 atagtacagccaacagaataattggcaagaaagaaaacaatcaaatttatgtgaa 23911097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 16624242 - 16624297
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccgg-attcacaaca 140  Q
    |||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||    
T  16624242 ttgctccacacatctttgttattcattggtgtgattttttaccggaattcacaaca 16624297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 31985815 - 31985919
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggat 132  Q
    |||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||| ||||||||||||| ||| ||||||||||||||||  ||| ||    
T  31985815 tttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgcaccacacatctttg-tttacattggtgtgagttttgtccgaat 31985911  T
Q  133 tcacaaca 140  Q
    ||||||||    
T  31985912 tcacaaca 31985919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 18855637 - 18855549
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||||||||||  |||||||  ||||| ||||| ||||||| ||||||||||||||| |||   | ||||||||||||||    
T  18855637 tttgttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 18855549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 25862203 - 25862309
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgg 130  Q
    |||||||||||||||| ||||||||||  |||  || || ||||||||||  || |||||||||||||||||||| ||||||||||||| ||||  |||     
T  25862203 tgtttttgttgttgtt-gcttggagacactttatct-attgattaccacttcct-ttgctccacacatctttgttattcattggtgtga-ttttgtccga 25862298  T
Q  131 attcacaacac 141  Q
    |||||||||||    
T  25862299 attcacaacac 25862309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 24333689 - 24333641
Alignment:
Q  71 gattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||||||||  || |||||||||||||||||||| |||||||||||||    
T  24333689 gattaccacttccttttgctccacacatctttgttattcattggtgtga 24333641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 8689714 - 8689765
Alignment:
Q  89 ctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    ||||||||||||||||| ||||||||||||| ||||| | | ||||||||||    
T  8689714 ctccacacatctttgttattcattggtgtgatttttaccggaattcacaaca 8689765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 16630913 - 16630956
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccg 129  Q
    |||||||||||||||||||| ||||||||||||| |||| ||||    
T  16630913 ttgctccacacatctttgttattcattggtgtgattttttaccg 16630956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 3796704 - 3796788
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||| ||||||||||  |||  || || ||||| ||||  || |||||||||||||||||||| |||||||||||||    
T  3796704 tttttgttgttgtt-gcttggagacactttatct-attgattatcacttccttttgctccacacatctttgttattcattggtgtga 3796788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 5397069 - 5397119
Alignment:
Q  90 tccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||||| ||||||||||||| ||||| | | ||||||||||    
T  5397069 tccacacatctttgttattcattggtgtgatttttaccggaattcacaaca 5397119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 34496056 - 34496108
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||    
T  34496056 ttgctccacacatctttg-ttttcattggtgtga-ttttgaccgaattcacaaca 34496108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 38152673 - 38152727
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||| ||||||||||||| ||||||||||||| ||||| | | ||||||||||    
T  38152673 ttgctctacacatctttgttattcattggtgtgatttttaccggaattcacaaca 38152727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 54867096 - 54867013
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||| ||||||||||  |||  || || ||||||||||  || |||||||||||||||||||| |||||||||||||    
T  54867096 tttttgttgttgtt-gcttggagacactttatct-attgattaccacttcct-ttgctccacacatctttgttattcattggtgtga 54867013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 10047243 - 10047188
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaacaca 142  Q
    ||||||||||||| |||||| ||||||||||||| ||||  ||| ||||||||||||    
T  10047243 ttgctccacacatttttgttattcattggtgtga-ttttgtccgaattcacaacaca 10047188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 273073 - 273188
Alignment:
Q  141 cataatatagtacaaatcaagccaatgatttggcaagcaagaatagtacggccaacagaataattggaaagcaagaaaacaatcaaaattatgtgaacaa 240  Q
    ||||||||| |||||| ||||||||||||||||||||||||||  |||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  273073 cataatatactacaaaccaagccaatgatttggcaagcaagaactgtacggccatgagaataattggcaagcaagaaaacaatcaaaattatgtgaacaa 273172  T
Q  241 gttcatgaaatgtaac 256  Q
    |  |||||||||||||    
T  273173 gggcatgaaatgtaac 273188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 421 - 527
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgga 131  Q
    |||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||    
T  421 tttttgttgttgtt-gcttggaaaccatttttgctcatagattaccactatctcttgctccacacatctttg-ttttcattggtgtgagttttaaatgga 518  T
Q  132 ttcacaaca 140  Q
    |||||||||    
T  519 ttcacaaca 527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 1457336 - 1457445
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagttt-taaccgg 130  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||||||  ||||||    
T  1457336 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccgg 1457435  T
Q  131 attcacaaca 140  Q
    ||||||||||    
T  1457436 attcacaaca 1457445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 27444878 - 27444770
Alignment:
Q  37 tgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagttt-taaccggat 132  Q
    |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||||||  ||||||||    
T  27444878 tgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggat 27444779  T
Q  133 tcacaacac 141  Q
    |||||||||    
T  27444778 tcacaacac 27444770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 27449722 - 27449615
Alignment:
Q  37 tgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagttt-taaccggat 132  Q
    |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||| ||| |||||  ||||||||||||||||||  ||||||||    
T  27449722 tgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacatatcattgtttatttcattggtgtgagtttggaaccggat 27449623  T
Q  133 tcacaaca 140  Q
    ||||||||    
T  27449622 tcacaaca 27449615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 43592189 - 43592078
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagttt-taaccgg 130  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||  |||||||| ||||| |||  ||||||    
T  43592189 tttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattgatgtgactttggaaccgg 43592090  T
Q  131 attcacaacaca 142  Q
    ||||||||||||    
T  43592089 attcacaacaca 43592078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 24135763 - 24135658
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggatt 133  Q
    ||||||||||||||||||||||||  |||  ||||||||||||||||  || ||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  24135763 ttttgttgttgtttgcttggagactcttta-ctcatagattaccactcccttttgctccacacatctttatttt-cattggtgtgagttttatccggatt 24135666  T
Q  134 cacaacac 141  Q
    ||||||||    
T  24135665 cacaacac 24135658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 35387594 - 35387474
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| ||||||||||||||||||||||||| ||||||||||  |||  | ||||||||| ||||  || |||||||||||||||||||||  ||||||||    
T  35387594 cactagactagggttgtttttgttgttgtt-gcttggagacacttta-cacatagattatcacttccttttgctccacacatctttgttta-cattggtg 35387498  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||||||||||||||||||    
T  35387497 tgagttttaaccggattcacaaca 35387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 43598634 - 43598525
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagttt-taaccgg 130  Q
    ||||||||||||||||||||||||| |||  ||||| ||||||||||||||||||||||||||||| |||||  |||||||||||||| |||  ||||||    
T  43598634 tttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccgg 43598535  T
Q  131 attcacaaca 140  Q
    ||||||||||    
T  43598534 attcacaaca 43598525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 43604126 - 43604017
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagttt-taaccgg 130  Q
    ||||||||||||||||||||||||| |||  ||||| ||||||||||||||||||||||||||||| |||||  |||||||||||||| |||  ||||||    
T  43604126 tttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccgg 43604027  T
Q  131 attcacaaca 140  Q
    ||||||||||    
T  43604026 attcacaaca 43604017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 43609618 - 43609509
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagttt-taaccgg 130  Q
    ||||||||||||||||||||||||| |||  ||||| ||||||||||||||||||||||||||||| |||||  |||||||||||||| |||  ||||||    
T  43609618 tttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccgg 43609519  T
Q  131 attcacaaca 140  Q
    ||||||||||    
T  43609518 attcacaaca 43609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 38192096 - 38191982
Alignment:
Q  24 ctagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 123  Q
    |||||| |||||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||||||  |||||||||||||||    
T  38192096 ctagggctgtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttgttta-cattggtgtgagttt 38192000  T
Q  124 taaccggattcacaacac 141  Q
     |||||||||||||||||    
T  38191999 caaccggattcacaacac 38191982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 38219321 - 38219207
Alignment:
Q  24 ctagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttt 123  Q
    |||||| |||||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||||||  |||||||||||||||    
T  38219321 ctagggctgtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttgttta-cattggtgtgagttt 38219225  T
Q  124 taaccggattcacaacac 141  Q
     |||||||||||||||||    
T  38219224 caaccggattcacaacac 38219207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 31180142 - 31180079
Alignment:
Q  77 cactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  31180142 cactatctcttgctccacacatcattgttattcattggtgtgagtttcaaccggattcacaaca 31180079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 30631318 - 30631224
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagttttaa 126  Q
    ||||||||||||| ||||| | ||||||||  ||||||||||||||||||||||||||||||||||| |||||  ||||||| |||||||||||||    
T  30631318 ttttgttgttgtt-gcttgaaaaccatttgttctcatagattaccactatctcttgctccacacatcattgtttatttcatttgtgtgagttttaa 30631224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 15464463 - 15464343
Alignment:
Q  17 cactggactagggttgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtg 116  Q
    |||| |||||||  |||||||||||||||| ||||||||||  |||  | ||| ||||||||||  || |||||||||||||||||||||  ||||||||    
T  15464463 cactagactaggtctgtttttgttgttgtt-gcttggagacacttta-cacattgattaccacttccttttgctccacacatctttgttta-cattggtg 15464367  T
Q  117 tgagttttaaccggattcacaaca 140  Q
    ||||||||| ||| ||||||||||    
T  15464366 tgagttttatccgaattcacaaca 15464343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 15044598 - 15044512
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||||||||||| | ||||||||||||||  ||||| ||||||||||||| ||||||| |||| || |||| ||||||||||||||    
T  15044598 ttttgttgttgttggtttggagaccatttgttctcattgattaccactatcacttgctctacacgtcattgtatttcattggtgtga 15044512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 37556797 - 37556867
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg 103  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| ||||||| |||||||||||||||||||    
T  37556797 ttttgttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttg 37556867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 37561619 - 37561689
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg 103  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| ||||||| |||||||||||||||||||    
T  37561619 ttttgttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttg 37561689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 17004140 - 17004226
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||||| ||||||||||  |||  || || ||||||||||  || ||||||||||| ||||||||||||||||||||||    
T  17004140 tgtttttgttgttgtt-gcttggagacactttatct-attgattaccacttccttttgctccacacctctttgtttttcattggtgtga 17004226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 31783958 - 31784001
Alignment:
Q  216 aaaacaatcaaaattatgtgaacaagttcatgaaatgtaactat 259  Q
    |||| ||||||||||||||||||||| |||||||||||||||||    
T  31783958 aaaataatcaaaattatgtgaacaaggtcatgaaatgtaactat 31784001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 2785287 - 2785221
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| | ||||| |||||||||||||||    
T  2785287 ttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 2785221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 14520145 - 14520039
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgg 130  Q
    |||||||||||||||| ||||||||||  |||  | ||| ||||||||||  || |||||||||||||||||||| ||||||||||||| |||| |||||    
T  14520145 tgtttttgttgttgtt-gcttggagacacttta-cacattgattaccacttcct-ttgctccacacatctttgttattcattggtgtga-ttttcaccgg 14520050  T
Q  131 -attcacaaca 140  Q
     ||||||||||    
T  14520049 aattcacaaca 14520039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 28807749 - 28807837
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||||||||||  |||||||  ||||| ||||| ||||||| ||||||||||||||| |||   | ||||||||||||||    
T  28807749 tttgttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 28807837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 31397166 - 31397232
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| | ||||| |||||||||||||||    
T  31397166 ttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 31397232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 31402023 - 31402089
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| | ||||| |||||||||||||||    
T  31402023 ttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 31402089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 33791228 - 33791162
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| | ||||| |||||||||||||||    
T  33791228 ttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 33791162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 42126640 - 42126693
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||    
T  42126640 ttgctccacacatctttgttattcattggtgtga-ttttatccgaattcacaaca 42126693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 213789 - 213846
Alignment:
Q  85 cttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaacaca 142  Q
    ||||||| ||||||||||||| ||||||||||||| ||||| | | ||||||||||||    
T  213789 cttgctctacacatctttgttattcattggtgtgatttttaccggaattcacaacaca 213846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 3880181 - 3880133
Alignment:
Q  71 gattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    ||||||||||  || |||||||||||||||||||| |||||||||||||    
T  3880181 gattaccacttccttttgctccacacatctttgttattcattggtgtga 3880133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 19588660 - 19588557
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggat 132  Q
    |||||||||||||| ||||||||||  |||  || || ||||||||||  || |||||||||||||||||||| ||||||||||||| ||||  ||| ||    
T  19588660 tttttgttgttgtt-gcttggagacgctttatct-attgattaccacttcct-ttgctccacacatctttgttattcattggtgtga-ttttgtccgaat 19588565  T
Q  133 tcacaaca 140  Q
    ||||||||    
T  19588564 tcacaaca 19588557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 11182017 - 11182100
Alignment:
Q  33 tttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||| ||||||||||  |||  || || ||||||||||  || |||||||||||||||||||| |||||||||||||    
T  11182017 tttttgttgttgtt-gcttggagacactttatct-attgattaccacttact-ttgctccacacatctttgttattcattggtgtga 11182100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 33768091 - 33768025
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| ||||||||  ||||||  ||||||||||| | ||||| |||||||||||||||    
T  33768091 ttttgttgttgttagcttggaggtcatttgcactcatagattatctctatcacttgctccacacatc 33768025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 42127593 - 42127695
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggatt 133  Q
    ||||||||||||| ||||||||||  |||  | ||| |||||||||| ||| |||||||||||||||||||| |||||| |||||| ||||  ||| |||    
T  42127593 ttttgttgttgtt-gcttggagacactttatc-cattgattaccactttct-ttgctccacacatctttgttattcattagtgtga-ttttgtccgaatt 42127688  T
Q  134 cacaaca 140  Q
    |||||||    
T  42127689 cacaaca 42127695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 10281726 - 10281693
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||||||||| |||||||||||||    
T  10281726 ttgctccacacatctttgttattcattggtgtga 10281693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 35235 - 35323
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtga 119  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  35235 ttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 35323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 24226 - 24332
Alignment:
Q  32 gtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgga 131  Q
    ||||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||||||  |||||||||||||||||||||||    
T  24226 gtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttgttta-cattggtgtgagttttaaccgga 24322  T
Q  132 ttcacaacac 141  Q
    ||||||||||    
T  24323 ttcacaacac 24332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 18133 - 18238
Alignment:
Q  32 gtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgga 131  Q
    ||||||||||||||| ||||||||||  |||  | ||||||||||||||  || |||||||||||||||||| ||| ||||||| |||||||||||||||    
T  18133 gtttttgttgttgtt-gcttggagacacttta-cacatagattaccacttccttttgctccacacatctttg-tttacattggtttgagttttaaccgga 18229  T
Q  132 ttcacaaca 140  Q
    |||||||||    
T  18230 ttcacaaca 18238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 9813 - 9902
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||||| ||||||||||||||  ||||| ||||| ||||||| ||||||||||||||| |||   | ||||||||||||||    
T  9813 ttttgttgttgtttggttggagaccatttgctctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 9902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 14482 - 14553
Alignment:
Q  34 ttttgttgttgttt-gcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg 103  Q
    ||||||||||| || |||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  14482 ttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttg 14553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 19338 - 19404
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| | ||||| |||||||||||||||    
T  19338 ttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 19404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 182137 - 182208
Alignment:
Q  34 ttttgttgttgttt-gcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg 103  Q
    ||||||||||| || |||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  182137 ttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttg 182208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 44140 - 44225
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||||| ||||||||||  |||  | ||| ||||||||||  || ||||||||||||||||||||||||||||||||||    
T  44140 tgtttttgttgttgtt-gcttggagacacttta-cacattgattaccacttcct-ttgctccacacatctttgtttttcattggtgtga 44225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 37013 - 37119
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccgg 130  Q
    |||||||||||||||| ||||||||||  |||  | ||| ||||||||||  || |||||||||||||||||||||||||| ||||||| |||| |||||    
T  37013 tgtttttgttgttgtt-gcttggagacacttta-cacattgattaccacttcct-ttgctccacacatctttgtttttcatcggtgtga-ttttcaccgg 37108  T
Q  131 -attcacaaca 140  Q
     ||||||||||    
T  37109 aattcacaaca 37119  T

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Target: scaffold0184 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 29703 - 29777
Alignment:
Q  65 ctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    ||||| ||||||||||  || ||||| ||||||| |||||||||||||||||||| |||| |||| ||||||||||    
T  29703 ctcattgattaccacttcct-ttgcttcacacatttttgtttttcattggtgtgatttttgaccgaattcacaaca 29777  T

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Target: scaffold0078 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 43141 - 43067
Alignment:
Q  65 ctcatagattaccactatctcttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    ||||| ||||||||||  || ||||| ||||||| |||||||||||||||||||| |||| |||| ||||||||||    
T  43141 ctcattgattaccacttcct-ttgcttcacacatttttgtttttcattggtgtgatttttgaccgaattcacaaca 43067  T

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Target: scaffold1805 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 1324 - 1217
Alignment:
Q  31 tgtttttgttgttgtttgcttggagaccatttggctcatagattaccactatctcttgctccacacatctttgt-ttttcattggtgtgagttttaaccg 129  Q
    |||||||||||||||| ||||||||||  |||  | ||| ||||||||||  || ||||||||||||||||||| ||||||||||||||| ||||| | |    
T  1324 tgtttttgttgttgtt-gcttggagacacttta-cacattgattaccacttcct-ttgctccacacatctttgttttttcattggtgtgatttttaccag 1228  T
Q  130 gattcacaaca 140  Q
     ||||||||||    
T  1227 aattcacaaca 1217  T

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Target: scaffold0464 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 273 - 185
Alignment:
Q  35 tttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||||||||||  |||||||  ||||| ||||| ||| ||| |||||||||||||||||||   | ||||||||||||||    
T  273 tttgttgttgtttgcttggaagccatttgttctcattgattatcaccatcacttgctccacacatctttggtttatttcattggtgtga 185  T

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Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 85549 - 85495
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtgagttttaaccggattcacaaca 140  Q
    |||||| ||||||||||||||||||||||||||| ||||| | | ||||||||||    
T  85549 ttgctctacacatctttgtttttcattggtgtgatttttaccggaattcacaaca 85495  T

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Target: scaffold0028 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 149129 - 149195
Alignment:
Q  34 ttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatc 99  Q
    ||||||||||||| |||||||| |||||||  ||||||||||| | ||||| |||||||||||||||    
T  149129 ttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 149195  T

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Target: scaffold0127 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 34132 - 34211
Alignment:
Q  44 gtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttg---tttttcattggtgtga 119  Q
    ||||||||||||||||||||  ||||| ||||| ||||||| ||||||||||||||| |||   | ||||||||||||||    
T  34132 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 34211  T

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Target: scaffold0148 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 10591 - 10558
Alignment:
Q  86 ttgctccacacatctttgtttttcattggtgtga 119  Q
    |||||||||||||||||||| |||||||||||||    
T  10591 ttgctccacacatctttgttattcattggtgtga 10558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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