View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12868_low_27 (Length: 238)
Name: NF12868_low_27
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11694422 - 11694645
Alignment:
| Q |
1 |
aactatttaatgtacttaaggagtggatgaaactttataaattataaaatgctaaaacaatattctatttcttacatgtatacg-aaaaaatatggttaa |
99 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
11694422 |
aactatttaatgtacttaaggagtgcatgaaactttataaattataaagtgctaaaatcatattctatttcttacatgtatacggaaaaaatatggttga |
11694521 |
T |
|
| Q |
100 |
aatagtcaaatttatctatggtttgattatcattcttttcatatatcttattgcaatgaatgttgatggtaagtcattttttctcattctcaaatttcgt |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11694522 |
aatagtcaaatttatttatggtttgattatcattcttttcatatatcttattggaatgaatgttgatggtaagtcattttttctcattctcaaatttcgt |
11694621 |
T |
|
| Q |
200 |
gagttactttctgcataatgtttg |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11694622 |
gagttactttctgcataatgtttg |
11694645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 28551595 - 28551523
Alignment:
| Q |
5 |
atttaatgtacttaaggagtggatgaaactttataaattataaaatgctaaaacaatattctatttcttacatg |
78 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||||| || |||||| |||||||||||| |||||| |
|
|
| T |
28551595 |
atttaatgtatataaggagtggacgag-ctttataaattataaagtgataaaaccatattctatttcatacatg |
28551523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 28555913 - 28555868
Alignment:
| Q |
33 |
ctttataaattataaaatgctaaaacaatattctatttcttacatg |
78 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||||||||||||||| |
|
|
| T |
28555913 |
ctttataaattataaattgataaaaccatattctatttcttacatg |
28555868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 181
Target Start/End: Complemental strand, 27259774 - 27259743
Alignment:
| Q |
150 |
ttgcaatgaatgttgatggtaagtcatttttt |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27259774 |
ttgcaatgaatgttgatggtaagtcatttttt |
27259743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University