View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_low_32 (Length: 217)
Name: NF12868_low_32
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 8890078 - 8889971
Alignment:
| Q |
20 |
aggtaagaaggaaatcttagagagtacgtggaaagagatatgtacatctctctagtctatgcacaaccttacatcaattacaaataaaaaaggatggcag |
119 |
Q |
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| T |
8890078 |
aggtaagaaggaaatcttagagagtacgtggaaagagatatgtacaaccttctagtctatgcacaaccttacatcaattacaaataaaaaaggatggcag |
8889979 |
T |
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| Q |
120 |
aagaacaa |
127 |
Q |
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| T |
8889978 |
aagaacaa |
8889971 |
T |
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Target: chr3; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 8889795 - 8889731
Alignment:
| Q |
136 |
tagctctgatcaaagaatcctttaggacttaatagtccaaatattgcaggttccactgatgccat |
200 |
Q |
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| T |
8889795 |
tagctctgatcaaagaatcctttaggacttaatagtccaaatattgcaggttccactgatgccat |
8889731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 17504693 - 17504651
Alignment:
| Q |
82 |
acaaccttacatcaattacaaataaaaaaggatggcagaagaa |
124 |
Q |
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| T |
17504693 |
acaaccttacatcaattacgaagaaaaaagaatggcagaagaa |
17504651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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