View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12868_low_36 (Length: 201)
Name: NF12868_low_36
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 4e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 16842984 - 16843152
Alignment:
| Q |
18 |
attccaaacacgaaatcttcaaagattagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctcttaaacacatggaat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16842984 |
attccaaacacgaaatcttcaaagattagatctctccaataacaacattcatggtaaaattcccaaatggtttcataagaagctcttaaacacatggaat |
16843083 |
T |
|
| Q |
118 |
gacattcggtacattgatcttagtttcaacaaattgcaaggagacattccaattccatcttatggcctt |
186 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16843084 |
gacatttggtacattgatcttagtttcaacaaattgcaaggagacattccaattccatcttatggcctt |
16843152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 16845838 - 16845948
Alignment:
| Q |
73 |
aaaattcccaaatggtttcataagaagctcttaaacacatggaatgacattcggtacattgatcttagtttcaacaaattgcaaggagacattccaattc |
172 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| | ||||| |||||||| ||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
16845838 |
aaaattccaaaatggtttcataagaagctcttaaactcgtggaaggacattcgacacattgacctcagtttcaacaaattgcaaggagacattccaattc |
16845937 |
T |
|
| Q |
173 |
catcttatggc |
183 |
Q |
| |
|
||| ||||||| |
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|
| T |
16845938 |
catattatggc |
16845948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 30 - 174
Target Start/End: Original strand, 24217866 - 24218010
Alignment:
| Q |
30 |
aaatcttcaaagattagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctcttaaacacatggaatgacattcggtac |
129 |
Q |
| |
|
|||||| ||| ||||||||||||| |||||||| ||||| |||||| |||| |||||||||||| ||||||||||| |||||||||| || ||||| |
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| T |
24217866 |
aaatctgcaaggattagatctctctaataacaaaattcaaggaaaagttcctaaatggtttcatgagaagctcttacacacatggaaggaaattcgaatt |
24217965 |
T |
|
| Q |
130 |
attgatcttagtttcaacaaattgcaaggagacattccaattcca |
174 |
Q |
| |
|
||| |||| ||||||||||| |||||||||||| |||| |||||| |
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|
| T |
24217966 |
attaatctcagtttcaacaagttgcaaggagaccttccgattcca |
24218010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 37594376 - 37594211
Alignment:
| Q |
18 |
attccaaacacgaaatcttcaaagattagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctcttaaacacatggaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
37594376 |
attccaaacacgaaatcttcaaagattagatctctccaataacaacattcatgggaaaattcccaaatggtttcataagaagctcttaaactcatggaat |
37594277 |
T |
|
| Q |
118 |
gacattcggtacattgatcttagtttcaacaaattgcaaggagacattccaattccatcttatggc |
183 |
Q |
| |
|
|| ||| ||||||||| | ||||||||||| || |||||||| ||||||||||| ||| |||| |
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|
| T |
37594276 |
gagatttcgtacattgacttgagtttcaacaagttacaaggagatcttccaattccaccttctggc |
37594211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 37711676 - 37711520
Alignment:
| Q |
18 |
attccaaacacgaaatcttcaaagattagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctcttaaacacatggaat |
117 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
37711676 |
attccaagcacgaaatctgcaaacattagatctctccaacaacaacattcatgggaaaattcccaaatggtttcatacgaagctcttaaactcatggaag |
37711577 |
T |
|
| Q |
118 |
gacattcggtacattgatcttagtttcaacaaattgcaaggagacattccaattcca |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
37711576 |
gacattcggtacattgatcttagtttcaacatgttgcaaggagatcttccaattcca |
37711520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 37639893 - 37639753
Alignment:
| Q |
43 |
ttagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctcttaaacacatggaatgacattcggtacattgatcttagtt |
142 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
37639893 |
ttagatctctccaataacaacattcatgggaaaattcccaaatggtttcataagaagctcttaaacacatggaaggacattcggtacattgatcttagtt |
37639794 |
T |
|
| Q |
143 |
tcaacaaattgcaaggagacattccaattccatcttatggc |
183 |
Q |
| |
|
|||||| ||||||||| | ||||||||||| || ||||| |
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|
| T |
37639793 |
tcaacatgttgcaaggacatcttccaattccacctgatggc |
37639753 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 37400994 - 37401151
Alignment:
| Q |
26 |
cacgaaatcttcaaagattagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctcttaaacacatggaatgacattcg |
125 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
37400994 |
cacgaaatctgaaaagattatatctctccaataacaacattcgtgggaaaattcccaaatggtttcataagaagctcttaaactcatggaaggacattca |
37401093 |
T |
|
| Q |
126 |
gtacattgatcttagtttcaacaaattgcaaggagacattccaattccatcttatggc |
183 |
Q |
| |
|
|||| | || || ||||||||||| || |||||||| ||||||||||| ||| |||| |
|
|
| T |
37401094 |
gtacttagacctcagtttcaacaagttacaaggagatcttccaattccaccttctggc |
37401151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 34 - 176
Target Start/End: Complemental strand, 37435743 - 37435589
Alignment:
| Q |
34 |
cttcaaagattagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctcttaaacacatgga------------atgaca |
121 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| | |
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|
| T |
37435743 |
cttcaaacattagatctctccaataacaacattcatgggaaaattcccaaatggtttcataagaagctcttaaacacattgaatgatattgcccatgaaa |
37435644 |
T |
|
| Q |
122 |
ttcggtacattgatcttagtttcaacaaattgcaaggagacattccaattccatc |
176 |
Q |
| |
|
|| | |||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37435643 |
ttagttacattgacctcagtttcaacaaattgcaaggagacattccaattccatc |
37435589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 37823917 - 37823776
Alignment:
| Q |
42 |
attagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctcttaaacacatggaatgacattcggtacattgatcttagt |
141 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| | |||| || ||| |
|
|
| T |
37823917 |
attagatctctccaacaacaacattcatgggaaaattcccaaatggtttcataagaagctcttaaactcatggaaggacatttggtccgttgacctcagt |
37823818 |
T |
|
| Q |
142 |
ttcaacaaattgcaaggagacattccaattccatcttatggc |
183 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| ||| |||| |
|
|
| T |
37823817 |
ttcaacaagttacaaggagatcttccaattccaccttctggc |
37823776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 37696742 - 37696611
Alignment:
| Q |
43 |
ttagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctcttaaacacatggaatgacattcggtacattgatcttagtt |
142 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||| | || | || || |||| |
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|
| T |
37696742 |
ttagatctctccaacaacaacattcatgggaaaattcccaaatggtttcataagaagctcttaaactcatggaaggacattcaggacttagacctcagtt |
37696643 |
T |
|
| Q |
143 |
tcaacaaattgcaaggagacattccaattcca |
174 |
Q |
| |
|
||||||| || |||||||| ||||||||||| |
|
|
| T |
37696642 |
tcaacaagttacaaggagatcttccaattcca |
37696611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 37393000 - 37393165
Alignment:
| Q |
18 |
attccaaacacgaaatcttcaaagattagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctcttaaacacatggaat |
117 |
Q |
| |
|
||||||| |||||||||| |||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37393000 |
attccaagcacgaaatctggaaagcttagatctctccaatagcaacattcatgcgagaattcccaaatggtttcataagaagctcttaaactcatggaag |
37393099 |
T |
|
| Q |
118 |
gacattcggtacattgatcttagtttcaacaaattgcaaggagacattccaattccatcttatggc |
183 |
Q |
| |
|
|||||| ||||||| || ||||||||||| || ||||| || ||||||||||| || ||||| |
|
|
| T |
37393100 |
gacattatacacattgacctgagtttcaacaagttacaaggtgatcttccaattccacctgatggc |
37393165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 37702720 - 37702615
Alignment:
| Q |
18 |
attccaaacacgaaatcttcaaagattagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctcttaaacacatggaat |
117 |
Q |
| |
|
||||||| ||| |||||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
37702720 |
attccaagcacaaaatctgcaaacattagatctctccaataactacattcatgggaaaattcccaaatggtttcataagaaactcttaaactcatggaag |
37702621 |
T |
|
| Q |
118 |
gacatt |
123 |
Q |
| |
|
|||||| |
|
|
| T |
37702620 |
gacatt |
37702615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 37428754 - 37428612
Alignment:
| Q |
42 |
attagatctctccaataacaacattcatgg-aaaaattcccaaatggtttcataagaagctcttaaacacatggaatgacattcggtacattgatcttag |
140 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| ||| |||||||||||| | |||||||||| ||||||| | ||| || || ||||||| || |
|
|
| T |
37428754 |
attagatctctccaaaaacaacattcatgggaaaaatttccatatggtttcataaaatgctcttaaactcatggaagtatatttggcacgttgatctcag |
37428655 |
T |
|
| Q |
141 |
tttcaacaaattgcaaggagacattccaattccatcttatggc |
183 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
37428654 |
tttcaacaagttgcaaggagatcttccaattccaccttatggc |
37428612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 37413395 - 37413526
Alignment:
| Q |
43 |
ttagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctcttaaacacatggaatgacattcggtacattgatcttagtt |
142 |
Q |
| |
|
|||||||| || ||||||| ||||| |||||| |||| |||||||||||| ||||||||||| ||||||||| || ||||| | || ||||| |||| |
|
|
| T |
37413395 |
ttagatctatctaataacataattcaaggaaaagttcctaaatggtttcatgagaagctcttacacacatggagggaaattcgacatatcgatctcagtt |
37413494 |
T |
|
| Q |
143 |
tcaacaaattgcaaggagacattccaattcca |
174 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| |
|
|
| T |
37413495 |
tcaacaagttgcaaggagatcttccaattcca |
37413526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 37533121 - 37533062
Alignment:
| Q |
43 |
ttagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctc |
102 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37533121 |
ttagatctctccaacaacaacattcatgggaaaattcccaaatggtttcataagaagctc |
37533062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 42 - 183
Target Start/End: Original strand, 37382473 - 37382614
Alignment:
| Q |
42 |
attagatctctccaataacaacattcatggaaaaattcccaaatggtttcataagaagctcttaaacacatggaatgacattcggtacattgatcttagt |
141 |
Q |
| |
|
|||||||||||| || ||||| ||||| || ||| |||| |||||||||||| ||||||||||| ||||||||| ||||||| | ||||||| ||| |
|
|
| T |
37382473 |
attagatctctctaaaaacaaaattcaagggaaagttcctaaatggtttcatgagaagctcttacacacatggagggacattcaacatgttgatctcagt |
37382572 |
T |
|
| Q |
142 |
ttcaacaaattgcaaggagacattccaattccatcttatggc |
183 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||| ||||||| |
|
|
| T |
37382573 |
ttcaacaagttgcaaggagatcttccaatcccacgttatggc |
37382614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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