View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_low_5 (Length: 436)
Name: NF12868_low_5
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_low_5 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Complemental strand, 54363 - 53958
Alignment:
| Q |
14 |
cagagacatccacatatggagaagaattcccaacatggatttgcatttcaggtactttgagtgattccattttgatcacaattcctccatgagtttgtga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54363 |
cagagacatccacatatggagaagaattcccaacatggatttgcatttcaggtactttgagtgattccattttgatcacaattcctccatgagtttgtga |
54264 |
T |
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| Q |
114 |
ttgtccttgaagtgaatgtccatgtcctcttgctgcaacagtgagatgagagctatgtcccatatgccatatatgttttattgtggttgcaatatcagaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54263 |
ttgtccttgaagtgaatgtccatgtcctcttgctgcaacagtgagatgagagctatgtcccatatgccatatatgttttattgttgttgcaatatcagaa |
54164 |
T |
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| Q |
214 |
actgattttgggtacatcactgccattgaatgatattggtatctattgccaaaatcttttgatgctttgttaaggctagtttcatcaaaactcaaatgtc |
313 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54163 |
actgattttgggtacatcactgccattggatgatattggtatctattgccaaaatcttttgatgctttgttaaggctagtttcatcaaaactcaaatgtc |
54064 |
T |
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| Q |
314 |
cttctagtggaagtgtttttaatgaaaaagggatgttggaaagacaaaagttaaaccttgtggctatacaactaagaaacaagatcatgaatcctttgag |
413 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54063 |
cttctagtggaagtgtttttaatgaaaacgggttgttggaaagacaaaagttaaaccttgtggctatacaactaagaaacaagatcatgaatcctttgag |
53964 |
T |
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| Q |
414 |
gaatag |
419 |
Q |
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| T |
53963 |
gaatag |
53958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 14785367 - 14785772
Alignment:
| Q |
14 |
cagagacatccacatatggagaagaattcccaacatggatttgcatttcaggtactttgagtgattccattttgatcacaattcctccatgagtttgtga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14785367 |
cagagacatccacatatggagaagaattcccaacatggatttgcatttcaggtactttgagtgattccattttgatcacaattcctccatgagtttgtga |
14785466 |
T |
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| Q |
114 |
ttgtccttgaagtgaatgtccatgtcctcttgctgcaacagtgagatgagagctatgtcccatatgccatatatgttttattgtggttgcaatatcagaa |
213 |
Q |
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| T |
14785467 |
ttgtccttgaagtgaatgtccatgtcctcttgctgcaacagtgagatgagagctatgtcccatatgccatatatgttttattgttgttgcaatatcagaa |
14785566 |
T |
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| Q |
214 |
actgattttgggtacatcactgccattgaatgatattggtatctattgccaaaatcttttgatgctttgttaaggctagtttcatcaaaactcaaatgtc |
313 |
Q |
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| T |
14785567 |
actgattttgggtacatcactgccattggatgatattggtatctattgccaaaatcttttgatgctttgttaaggctagtttcatcaaaactcaaatgtc |
14785666 |
T |
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| Q |
314 |
cttctagtggaagtgtttttaatgaaaaagggatgttggaaagacaaaagttaaaccttgtggctatacaactaagaaacaagatcatgaatcctttgag |
413 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14785667 |
cttctagtggaagtgtttttaatgaaaacgggttgttggaaagacaaaagttaaaccttgtggctatacaactaagaaacaagatcatgaatcctttgag |
14785766 |
T |
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| Q |
414 |
gaatag |
419 |
Q |
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|||||| |
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| T |
14785767 |
gaatag |
14785772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 73 - 419
Target Start/End: Original strand, 13415560 - 13415906
Alignment:
| Q |
73 |
agtgattccattttgatcacaattcctccatgagtttgtgattgtccttgaagtgaatgtccatgtcctcttgctgcaacagtgagatgagagctatgtc |
172 |
Q |
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||||||||||| |||||||||| ||| | | || ||||| ||| ||||||||||| || ||||||||||| ||||||||||| || ||||| || | | |
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| T |
13415560 |
agtgattccatattgatcacaactccctcttcagcttgtgcttgcccttgaagtgagtggccatgtcctctagctgcaacagttaggtgagaacttggac |
13415659 |
T |
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| Q |
173 |
ccatatgccatatatgttttattgtggttgcaatatcagaaactgattttgggtacatcactgccattgaatgatattggtatctattgccaaaatcttt |
272 |
Q |
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| T |
13415660 |
ctaaattccatatatgctttatagtaactgcaatatcagaaactgattttggatgtagtactgtcataggatgagattggtacctgttgccaaaatcttt |
13415759 |
T |
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| Q |
273 |
tgatgctttgttaaggctagtttcatcaaaactcaaatgtccttctagtggaagtgtttttaatgaaaaagggatgttggaaagacaaaagttaaacctt |
372 |
Q |
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| T |
13415760 |
agctgcattttttaggtcaagttcatcaaaactaaagtgtccttctaaaggaagtgttttcaaggaaaaagggatgcttgaaatacaaaaattaagtcta |
13415859 |
T |
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| Q |
373 |
gtggctatacaactaagaaacaagatcatgaatcctttgaggaatag |
419 |
Q |
| |
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||| |||||||||||| || || |||||||| ||||| | |||||| |
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| T |
13415860 |
atggttatacaactaaggaataaaatcatgaagccttttatgaatag |
13415906 |
T |
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