View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12868_low_7 (Length: 433)
Name: NF12868_low_7
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 174 - 414
Target Start/End: Complemental strand, 55060688 - 55060447
Alignment:
| Q |
174 |
ggaaatctgtttatgaatcaagaacatggtttggtgaaatattggctactaa-gagttctgttgattgtgatgttgttatagttgttcctgattgtggtg |
272 |
Q |
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| T |
55060688 |
ggaaatctgtttatgaatcaagaagatggtttggtgaaatattggctactaaagagtcctgttgattgtgatgttgttatagttgttcctgattttggtg |
55060589 |
T |
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| Q |
273 |
ttgttgctgcacttggttatgctgcaaaagttggtgttccttttcaacagggtttgattaggtcacactatgttggtagaactttcattgagccatcaca |
372 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
55060588 |
ttgttgctgcacttggttatgctgcaaaagctggtgttccttttcaacagggtttgattaggccacactatgttggtagaactttcattgagccatcaca |
55060489 |
T |
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| Q |
373 |
gaagattagagattttggtgtgaagttgaagctttcgccggt |
414 |
Q |
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| T |
55060488 |
gaagattagagattttggtgtgaagttgaagctttcgccggt |
55060447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 55060845 - 55060741
Alignment:
| Q |
19 |
ttgattgaagctacttatgaaagagaggtttgtcctggtgagattgtggttgtggataaaagtggtgttcaatctcattgtcttgtttctcgtccagaac |
118 |
Q |
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| T |
55060845 |
ttgattgaagctacttatgaaagagaggtttatcctggtgagattgtggttgtggataaaagtggtgttcaatctcattgtcttgtttctcgtccagaac |
55060746 |
T |
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| Q |
119 |
caaaa |
123 |
Q |
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| T |
55060745 |
caaaa |
55060741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 218 - 411
Target Start/End: Complemental strand, 27356828 - 27356635
Alignment:
| Q |
218 |
gctactaagagttctgttgattgtgatgttgttatagttgttcctgattgtggtgttgttgctgcacttggttatgctgcaaaagttggtgttccttttc |
317 |
Q |
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| T |
27356828 |
gctactgagagtcctgttgattgtgatgttgtgatagctgttcctgattctggtgttgtggctgctcttggttatgctgcgaaagctggtgttccttttc |
27356729 |
T |
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| Q |
318 |
aacagggtttgattaggtcacactatgttggtagaactttcattgagccatcacagaagattagagattttggtgtgaagttgaagctttcgcc |
411 |
Q |
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| T |
27356728 |
agcaagggttgattaggtcacactatgtaggaaggactttcattgagccatctcagaaaattagggattttggtgtgaagttgaagctttcgcc |
27356635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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