View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12868_low_8 (Length: 398)
Name: NF12868_low_8
Description: NF12868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12868_low_8 |
 | |
|
| [»] scaffold0159 (2 HSPs) |
| | |
|
| [»] scaffold0214 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 18765385 - 18765010
Alignment:
| Q |
17 |
aaacggagataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgat |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18765385 |
aaacggagatatgattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatgataacatgccgagccatataaactttgcatgat |
18765286 |
T |
|
| Q |
117 |
actaattacttccatgtaattgaattagaagaaacggttctttcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18765285 |
actaattacttccatgtaattgaattagaagaagcggttctctcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatca |
18765186 |
T |
|
| Q |
217 |
aaatctaaaagaaaaatatatttaaataaacattagtcacttaacttgata-gaacagttatatgtaaatagtccaaaaattgtactatgcgagtcaatc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
18765185 |
aaatctaaaagaaaaatatatttaaataaacattagtcacttaacttgatataaacagttatatgtaaatagtccaaaaattgtattatgcgagtcggtc |
18765086 |
T |
|
| Q |
316 |
aatagattttgcacctctatttaccaatttcgttcccttttccatgtttcctggtgacatccatttgctacctttg |
391 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18765085 |
aatagattttgcacctctatttgccaatttcgttcccttttccatgtttcctggtgacatccatttgctacctttg |
18765010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 20024860 - 20024492
Alignment:
| Q |
17 |
aaacggagataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || |||||| |
|
|
| T |
20024860 |
aaacggagataagattttatgatcatcacttctggcataacaataattgtatagtcttgtatgtatgataacatgtcgagctatataaacattccatgat |
20024761 |
T |
|
| Q |
117 |
actaattacttccatgtaattgaattagaagaaacggttctttcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatca |
216 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20024760 |
actaattacttccatgtaattgtatttgaagaagcgtttctctcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatca |
20024661 |
T |
|
| Q |
217 |
aaatctaaaagaaaaatatatttaaataaacattagtcacttaacttgatag-aacagttatatgtaaatagtccaaaaattgtactatgcgagtcaatc |
315 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| || || |
|
|
| T |
20024660 |
aaatctaagagaaaaatatatttaaataaacattagtcacttaacttgatagaaacaattatatgtaaatagtccaaaaattgtgttatgcgagccagtc |
20024561 |
T |
|
| Q |
316 |
aatagattttgcacctctatttaccaatttcgttcccttttccatgtttcctggtgacatccatttgct |
384 |
Q |
| |
|
|||||||| ||||||||||| | ||||||| | |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20024560 |
aatagattatgcacctctatctgccaattttggtcccttttccatgtttcccggtgacatccatttgct |
20024492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 21392305 - 21391936
Alignment:
| Q |
17 |
aaacggagataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgat |
116 |
Q |
| |
|
|||| |||||||||| |||| ||||||| |||| |||||||||||| ||||||||||||||||| | |||||| | | |||||||||||||||||||| |
|
|
| T |
21392305 |
aaacagagataagatattatcatcatcatttcaggcataacaataacaatatagtcttgtatgtatgacaacatgtcaaaccatataaactttgcatgat |
21392206 |
T |
|
| Q |
117 |
actaattacttccatgtaattgaattagaagaaacggttctttcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatca |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| | ||| | ||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
21392205 |
actaattacttctatgtaattgaattagaagaagcagttttctcaacttgtatcgttaaatcaacttcatcatttggcctttaatccaaaatgatcaaca |
21392106 |
T |
|
| Q |
217 |
aaatctaaaagaaaaatatatttaaataaacattagtcacttaacttgatag--aacagttatatgtaaatagtccaaaaattgtactatgcgagtcaat |
314 |
Q |
| |
|
||||| ||||||||||||||||||| | ||||||||||||||||| || | ||| ||||||||||||||||||| | | |||| |||||| | |
|
|
| T |
21392105 |
aaatcagaaagaaaaatatatttaaa-------tcgtcacttaacttgataggaaaaaattaaatgtaaatagtccaaaaatggaattatgtgagtcagt |
21392013 |
T |
|
| Q |
315 |
caatagattttgcacctctatttaccaatttcgttcccttttccatgtttcctggtgacatccatttgctacctttg |
391 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| ||||||||||||||| ||||||||||| |||||||| |||||| |
|
|
| T |
21392012 |
caatagattatgcacctctatctgccaatttcggtcccttttccatgttccctggtgacatacatttgctgcctttg |
21391936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 31570292 - 31570661
Alignment:
| Q |
17 |
aaacggagataagatttt-atgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatga |
115 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||| || ||||| |||||||||| ||||||| ||||||| | || ||| |||||||||||| |
|
|
| T |
31570292 |
aaacgaagataagatttttatgatcatcgcttcaggcgtaaca------gtatagtcttatatgtatggtaacatgtttaaccgtatcaactttgcatga |
31570385 |
T |
|
| Q |
116 |
tactaattacttccatgtaattgaattagaagaaacggttctttcatcttatat-cgttaaaacaacttcatcacttggcctttaatccaaaatgatcat |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31570386 |
tactaattacttccatgtaattgagttagaagaagcggttctctcgaattatattcgttaaatcaacttcatcacttggcctttaatccaaaatgatcaa |
31570485 |
T |
|
| Q |
215 |
caaaatctaaaagaaaaatatatttaaataaacattagtcacttaacttgatag-aacagttatatgtaaatagtccaaaaattgtactatgcgagtcaa |
313 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||||||| |||||| | |||| |||| | |
|
|
| T |
31570486 |
caaaatctgaaagaaaaatatatttaaatcagcattagttacttaacttgatagaaacaattatatgtaaatagtccgaaaattaaattatgtgagttag |
31570585 |
T |
|
| Q |
314 |
tcaatagattttgcacctctatttaccaatttcgttcccttttccatgtttcctggtgacatccatttgctacctt |
389 |
Q |
| |
|
| |||||||| ||||||||||| | | ||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31570586 |
ttaatagattatgcacctctatctgttagtttcggtcccttttccatgttgcctggtgacatccatttgctacctt |
31570661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 18784952 - 18784706
Alignment:
| Q |
17 |
aaacggagataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgat |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | |||||| || |||||||||||||||||||| |
|
|
| T |
18784952 |
aaacggatataagattttatgatcatcacttcatgcataacaataacaatatagtcttgtatatatgaaaacatgttgaaccatataaactttgcatgat |
18784853 |
T |
|
| Q |
117 |
actaattacttccatgtaattgaattagaagaaacggttctttcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatca |
216 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| | | ||| ||| |||||||||||||| |||||||||||| || ||||||||||||||||||| || |
|
|
| T |
18784852 |
actaattatttccatgtaattgaatcagaagaagcagctctctcaacttatatcgttaaatcaacttcatcacctgagctttaatccaaaatgatcaaca |
18784753 |
T |
|
| Q |
217 |
aaatctaaaagaaaaatatatttaaataaacattagtcacttaactt |
263 |
Q |
| |
|
|||| | |||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
18784752 |
aaatttgaaagaaaaatatatttaaatcaacattagccacttaactt |
18784706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 21 - 286
Target Start/End: Complemental strand, 14602547 - 14602288
Alignment:
| Q |
21 |
ggagataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgatacta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| | | || ||||||||||||||||||||| |
|
|
| T |
14602547 |
ggagataagattttatgatcatcacttcaggcataacaataatagtatagtcttgtatg----ataacatgtctaaccgtataaactttgcatgatacta |
14602452 |
T |
|
| Q |
121 |
attacttccatgtaattgaattagaagaaacggttctttcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatcaaaat |
220 |
Q |
| |
|
|||| |||||||||||| ||||||||||| | ||||| ||| ||||||| |||||| ||||| |||||||||||||||||||||||||||| ||| || |
|
|
| T |
14602451 |
attaattccatgtaattaaattagaagaagcagttctctcaacttatattgttaaatcaact---tcacttggcctttaatccaaaatgatcaacaacat |
14602355 |
T |
|
| Q |
221 |
ctaaaagaaaaatatatttaaataaacattagtcacttaacttgatag-aacagttatatgtaaata |
286 |
Q |
| |
|
| |||| |||||| |||||||| | ||||||| | |||||||||||| |||| ||||||||||||| |
|
|
| T |
14602354 |
tttaaagtaaaataaatttaaatcagcattagtaatttaacttgatagaaacaattatatgtaaata |
14602288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 23159988 - 23159793
Alignment:
| Q |
17 |
aaacggagataagatttt-atgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatga |
115 |
Q |
| |
|
||||| |||||||||||| |||||||||| |||| || ||||| ||| ||||||||| |||||| |||||| | | | |||||||||||||||| |
|
|
| T |
23159988 |
aaacgaagataagatttttatgatcatcatttcaggcgtaacagtaacaatatagtcttatatgtacggtaacatatctaactgtataaactttgcatga |
23159889 |
T |
|
| Q |
116 |
tactaattacttccatgtaattgaattagaagaaacggttctttcatcttata-tcgttaaaacaacttcatcacttggcctttaatccaaaatga |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
23159888 |
tactaattacttccatgtaattgagttagaagaaacggttctctcaaattatattcgttaaatcaactttatcacttggcctttaatccaaaatga |
23159793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 6506950 - 6507325
Alignment:
| Q |
17 |
aaacggagataagatttt-atgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatga |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| || ||||| ||| ||| | |||| ||||||| ||||||| | | || |||||||||||||||| |
|
|
| T |
6506950 |
aaacggagataagatttttatgatcatcacttcaggcgtaacagtaacagtacaatcttatatgtatggtaacatgtctaaccgtataaactttgcatga |
6507049 |
T |
|
| Q |
116 |
tactaattacttccatgtaattgaattagaagaaacggttctttcatcttata-tcgttaaaacaacttcatcacttggcctttaatccaaaatgatcat |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6507050 |
tactaattacttccatgtaattgagttagaagaagcggttctctcaagttatattcgttaaatcaacttcatcacttggcttttaatccaaaatgatcaa |
6507149 |
T |
|
| Q |
215 |
caaaatctaaaagaaaaatatatttaaataaacattagtcacttaacttgatag-aacagttatatgtaaatagtccaaaaattgtactatgcgagtcaa |
313 |
Q |
| |
|
|||| | | |||||||||||| ||||| | ||||||||| |||||||||||||| || | ||||||||||||||||| |||||| | |||| |||||| |
|
|
| T |
6507150 |
caaagtgtgaaagaaaaatatctttaattcaacattagttacttaacttgatagaaataattatatgtaaatagtccgaaaattaaattatgtgagtcag |
6507249 |
T |
|
| Q |
314 |
tcaatagattttgcacctctatttaccaatttcgttcccttttccatgtttcctggtgacatccatttgctacctt |
389 |
Q |
| |
|
| |||||||| ||||||||||| | | ||||| ||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
6507250 |
ttaatagattatgcacctctatctgttagtttcggtcccttttccatgttgcctggtgacatccattttctacctt |
6507325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 50378223 - 50378596
Alignment:
| Q |
17 |
aaacggagataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgat |
116 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||| || |||||||||| ||||||||| ||| ||| |||||||| | | || ||||||||||||| ||| |
|
|
| T |
50378223 |
aaacgtagataaaattttatgatcatcgcttcaagcgtaacaataataatatagtcttatatctatgataacatgtccaaccgtataaactttgcaagat |
50378322 |
T |
|
| Q |
117 |
actaattacttccatgtaattgaattagaagaaacggttctttcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatca |
216 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| ||| | ||| |||||||||||||| |||||| ||||| ||||||||| | ||||||||||| || |
|
|
| T |
50378323 |
actaattacttctatgtaattgaatttgaagaagtagttttctcaacttatatcgttaaatcaacttaatcacctggcctttacttcaaaatgatcaaca |
50378422 |
T |
|
| Q |
217 |
aaatctaaaagaaaaatatatttaaataaacattagtcacttaacttgatag-aacagttatatgtaaatagtccaaaaattgtactatgcgagtcaatc |
315 |
Q |
| |
|
|||||| ||||||||| ||||||||| | ||| |||||||||||||||||| |||| |||| |||||| || |||||||| | |||| |||||| | |
|
|
| T |
50378423 |
aaatctgaaagaaaaaattatttaaatcaccatcagtcacttaacttgatagaaacaattatgcataaatattcaaaaaattgaattatgtgagtcagcc |
50378522 |
T |
|
| Q |
316 |
aatagattttgcacctctatttaccaatttcgttcccttttccatgtttcctggtgacatccatttgctacctt |
389 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| ||||||||||||||| | |||||||||||||||||| |||| |
|
|
| T |
50378523 |
aatagattatgcacctctatctaccagtttcggtcccttttccatgttccttggtgacatccatttgctgcctt |
50378596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 8370504 - 8370400
Alignment:
| Q |
25 |
ataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgatactaatta |
124 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||| | || | |||||||||||||| ||| |||| |
|
|
| T |
8370504 |
ataagattttatgatcatcacttcaagcataacaata-----atagtcttatatgtatgataacatgtctccccgtgtaaactttgcatgaaactcatta |
8370410 |
T |
|
| Q |
125 |
cttccatgta |
134 |
Q |
| |
|
|||||||||| |
|
|
| T |
8370409 |
cttccatgta |
8370400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 8370351 - 8370298
Alignment:
| Q |
154 |
ttctttcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaa |
207 |
Q |
| |
|
|||| ||| ||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
8370351 |
ttctctcaacttgtatcgttaaaccaacttcatcacttggcctttaatcgaaaa |
8370298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 32 - 382
Target Start/End: Complemental strand, 32725770 - 32725419
Alignment:
| Q |
32 |
tttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgatactaattacttccat |
131 |
Q |
| |
|
|||||||||||||| | | ||||| ||||||| ||||||| | ||||||| |||||||| | | || ||||||||||| ||||||| |||||||||||| |
|
|
| T |
32725770 |
tttatgatcatcacataaggcatatcaataataatatagtcgtatatgtatgataacatgtctaaccgtataaactttgtatgataccaattacttccat |
32725671 |
T |
|
| Q |
132 |
gtaattgaattagaagaaacggttctttcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatcaaaatctaaaagaaaa |
231 |
Q |
| |
|
|||||||||||||||||| | ||| | ||| ||||| |||||||| ||| ||||||||||| | ||||||||||||||||| |||||||| |||| ||| |
|
|
| T |
32725670 |
gtaattgaattagaagaagcagttgtctcaacttatgtcgttaaatcaaattcatcacttgatcgttaatccaaaatgatcaacaaaatctgaaagtaaa |
32725571 |
T |
|
| Q |
232 |
atatatttaaataaacattagtcacttaacttgatag-aacagttatatgtaaatagtccaaaaattgtactatgcgagtcaatcaatagattttgcacc |
330 |
Q |
| |
|
||| |||||||| |||||||||||||| ||||||||| |||| |||| ||||||||||||||||| || | |||| |||||| |||||||||| |||||| |
|
|
| T |
32725570 |
ataaatttaaatcaacattagtcacttcacttgatagaaacaattatctgtaaatagtccaaaaaatgaattatgtgagtcagtcaatagattatgcacc |
32725471 |
T |
|
| Q |
331 |
tctatttaccaatttcgttcccttttccatgtttcctggtgacatccatttg |
382 |
Q |
| |
|
||||| | | | ||||| |||| |||| ||||| |||||||||||||||||| |
|
|
| T |
32725470 |
tctatctgctagtttcggtcccctttctatgttccctggtgacatccatttg |
32725419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 35329840 - 35330006
Alignment:
| Q |
17 |
aaacggagataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgat |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || |||||||| ||||||| ||||||| |||| ||| | | || |||||||||| |||||| |
|
|
| T |
35329840 |
aaacgtagataagattttatgatcatcacttcaggcgtaacaata------tagtcttatatgtatgataatatgtctaaccgtataaactttacatgat |
35329933 |
T |
|
| Q |
117 |
actaattacttccatgtaattgaattagaagaaacggttctttcatcttata-tcgttaaaacaacttcatca |
188 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| ||||||| ||| |||||| |||||||| ||||||||||| |
|
|
| T |
35329934 |
actaattacatacatgtaattgaattagaagaagcggttctctcaacttatattcgttaaatcaacttcatca |
35330006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 17 - 389
Target Start/End: Complemental strand, 15722387 - 15722014
Alignment:
| Q |
17 |
aaacggagataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgat |
116 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||| || ||||| |||| ||||||||| ||||||| |||||||| | | || ||||||||||||| ||| |
|
|
| T |
15722387 |
aaacgtagataaaattttatgatcatcgcttcaagcgtaacagtaataatatagtcttatatgtatgataacatgtccaaccgtataaactttgcaagat |
15722288 |
T |
|
| Q |
117 |
actaattacttccatgtaattgaattagaagaaacggttctttcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatca |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| | ||| |||||||||||||| |||||| ||||| | ||||||||| ||||||||||| | |
|
|
| T |
15722287 |
actaattacttccatgtaattgaatttgaagaagtagttttctcaacttatatcgttaaatcaacttaatcacctagcctttaattcaaaatgatcaaaa |
15722188 |
T |
|
| Q |
217 |
aaatctaaaagaaaaatatatttaaataaacattagtcacttaacttgatagaa-cagttatatgtaaatagtccaaaaattgtactatgcgagtcaatc |
315 |
Q |
| |
|
|||| | |||||||||| ||||||||| | ||| ||||||||||||| |||||| || |||| ||||||| | |||||||| | |||| |||||| | |
|
|
| T |
15722187 |
aaatttgaaagaaaaatttatttaaatcagcatcagtcacttaacttcatagaagcaattatgcgtaaatattaaaaaaattgaattatgtgagtcagcc |
15722088 |
T |
|
| Q |
316 |
aatagattttgcacctctatttaccaatttcgttcccttttccatgtttcctggtgacatccatttgctacctt |
389 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| ||||||||||||||| | |||||||||||||||||| |||| |
|
|
| T |
15722087 |
aatagattatgcacctctatctaccagtttcggtcccttttccatgttccttggtgacatccatttgctgcctt |
15722014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 7486499 - 7486297
Alignment:
| Q |
17 |
aaacggagataagatttt-atgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatga |
115 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| || ||||| |||||||||| ||||||| ||||||| | | |||||||||||||||| |
|
|
| T |
7486499 |
aaacggagataagatttttataatcatcacttcaggcgtaaca------gtatagtcttatatgtatggtaacatgtttaactgtataaactttgcatga |
7486406 |
T |
|
| Q |
116 |
tactaattacttccatgtaattgaattagaagaaacggttctttcatcttatat-cgttaaaacaacttcatcacttggcctttaatccaaaatgatcat |
214 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7486405 |
tactaatt---tccatgtaattgagatagaagaagcggttctctcgaattatattcgttaaatcaacttcatcacttggcctttaatccaaaatgatcaa |
7486309 |
T |
|
| Q |
215 |
caaaatctaaaa |
226 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7486308 |
caaaatctaaaa |
7486297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 23 - 389
Target Start/End: Complemental strand, 16046417 - 16046048
Alignment:
| Q |
23 |
agataagatttt-atgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgatactaa |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||| || ||||| |||| ||| | |||| |||||| ||||||| | | | ||||||||||||| |||||||| |
|
|
| T |
16046417 |
agataagatttttatgatcatcacttcaggcgtaacagtaatagtacaatcttatatgtacggtaacatgtctaactgtataaactttgcaagatactaa |
16046318 |
T |
|
| Q |
122 |
ttacttccatgtaattgaattagaagaaacggttctttcatcttatat-cgttaaaacaacttcatcacttggcctttaatccaaaatgatcatcaaaat |
220 |
Q |
| |
|
|||||||||| ||||||| ||||||||| | ||||| | | |||||| ||||||| || ||| ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
16046317 |
ttacttccatataattgagttagaagaagcagttctctaaaattatattcgttaaatcagctttatcacctggcctttaatccaaaatgatcaacaaaac |
16046218 |
T |
|
| Q |
221 |
ctaaaagaaaaatatatttaaataaacattagtcacttaacttgatag-aacagttatatgtaaatagtccaaaaattgtactatgcgagtcaatcaata |
319 |
Q |
| |
|
| |||||||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||||||||| ||||| | |||| |||||| | |||| |
|
|
| T |
16046217 |
ttgaaagaaaaatatatttaaatcagcattagtcacttaacttgatagaaacaattatatgtaaatagtccgaaaatcaaattatgtgagtcagttaata |
16046118 |
T |
|
| Q |
320 |
gattttgcacctctatttaccaatttcgttcccttttccatgtttcctggtgacatccatttgctacctt |
389 |
Q |
| |
|
|||| ||||||||||| | | ||||| ||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
16046117 |
gattatgcacctctatatgttagtttcggtcccttttccatgttgtctggtgacatccatttgctgcctt |
16046048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 44968072 - 44968238
Alignment:
| Q |
17 |
aaacggagataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgat |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || |||||||| ||||||| ||||||| |||||||| | | || |||||||||| |||||| |
|
|
| T |
44968072 |
aaacgtagataagattttatgatcatcacttcaggcgtaacaata------tagtcttatatgtatgataacatgtctaaccgtataaactttacatgat |
44968165 |
T |
|
| Q |
117 |
actaattacttccatgtaattgaattagaagaaacggttctttcatcttata-tcgttaaaacaacttcatca |
188 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| ||||||| ||| |||||| |||||||| ||||||||||| |
|
|
| T |
44968166 |
actaattacatacatgtaattgaattagaagaagcggttctctcaacttatattcgttaaatcaacttcatca |
44968238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 27821 - 27600
Alignment:
| Q |
21 |
ggagataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgatacta |
120 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |||||||||||| ||||||||||||||||| | |||||| ||| ||||||||||||||||||||| || |
|
|
| T |
27821 |
ggagataagattttattatcatcatttcaggcataacaataacaatatagtcttgtatgtatgacaacatgtcgaaccatataaactttgcatgatatta |
27722 |
T |
|
| Q |
121 |
attacttccatgtaattgaattagaagaaacggttctttcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatcaaaat |
220 |
Q |
| |
|
||||||||||||||| ||||||||||||| | ||||| ||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
27721 |
attacttccatgtaaatgaattagaagaagcagttctctcaacttatttcgttaaatcaacttcatcacttggcctttaatctaaaatgatcaacaaaat |
27622 |
T |
|
| Q |
221 |
ctaaaagaaaaatatatttaaat |
243 |
Q |
| |
|
| | ||||||||||||||||||| |
|
|
| T |
27621 |
c-agaagaaaaatatatttaaat |
27600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 35952 - 35731
Alignment:
| Q |
21 |
ggagataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgatacta |
120 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |||||||||||| ||||||||||||||||| | |||||| ||| ||||||||||||||||||||| || |
|
|
| T |
35952 |
ggagataagattttattatcatcatttcaggcataacaataacaatatagtcttgtatgtatgacaacatgtcgaaccatataaactttgcatgatatta |
35853 |
T |
|
| Q |
121 |
attacttccatgtaattgaattagaagaaacggttctttcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatcaaaat |
220 |
Q |
| |
|
||||||||||||||| ||||||||||||| | ||||| ||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
35852 |
attacttccatgtaaatgaattagaagaagcagttctctcaacttatttcgttaaatcaacttcatcacttggcctttaatctaaaatgatcaacaaaat |
35753 |
T |
|
| Q |
221 |
ctaaaagaaaaatatatttaaat |
243 |
Q |
| |
|
| | ||||||||||||||||||| |
|
|
| T |
35752 |
c-agaagaaaaatatatttaaat |
35731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 5782489 - 5782268
Alignment:
| Q |
21 |
ggagataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgatacta |
120 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |||||||||||| ||||||||||||||||| | |||||| ||| ||||||||||||||||||||| || |
|
|
| T |
5782489 |
ggagataagattttattatcatcatttcaggcataacaataacaatatagtcttgtatgtatgacaacatgtcgaaccatataaactttgcatgatatta |
5782390 |
T |
|
| Q |
121 |
attacttccatgtaattgaattagaagaaacggttctttcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatcaaaat |
220 |
Q |
| |
|
||||||||||||||| ||||||||||||| | ||||| ||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
5782389 |
attacttccatgtaaatgaattagaagaagcagttctctcaacttatttcgttaaatcaacttcatcacttggcctttaatctaaaatgatcaacaaaat |
5782290 |
T |
|
| Q |
221 |
ctaaaagaaaaatatatttaaat |
243 |
Q |
| |
|
| | ||||||||||||||||||| |
|
|
| T |
5782289 |
c-agaagaaaaatatatttaaat |
5782268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 100 - 389
Target Start/End: Complemental strand, 1203 - 915
Alignment:
| Q |
100 |
tataaactttgcatgatactaattacttccatgtaattgaattagaagaaacggttctttcatcttatatc-gttaaaacaacttcatcacttggccttt |
198 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| | ||| || |||||| |||||||||||| |||||| |
|
|
| T |
1203 |
tataaactttgcatgatactaatt---tccatgtaattgagatagaagaagcggttctcttgaattagatttgttaaatcaacttcatcacactgccttt |
1107 |
T |
|
| Q |
199 |
aatccaaaatgatcatcaaaatctaaaagaaaaatatatttaaataaacattagtcacttaacttgatag-aacagttatatgtaaatagtccaaaaatt |
297 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
1106 |
aatccaaaatgatcaacaacatctaaaagaaaaatatatttaaatcagcattagttacttaacttgatagaaacaattatatgtaaatagtccgaaaatt |
1007 |
T |
|
| Q |
298 |
gtactatgcgagtcaatcaatagattttgcacctctatttaccaatttcgttcccttttccatgtttcctggtgacatccatttgctacctt |
389 |
Q |
| |
|
| |||| |||||| | |||||||| ||||||||||| | | ||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1006 |
aaattatgtgagtcagttaatagattatgcacctctatctgttattttcggtcccttttccatgttgcctggtgacatccatttgctacctt |
915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 1967259 - 1967634
Alignment:
| Q |
17 |
aaacggagataagattttatgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatgat |
116 |
Q |
| |
|
||||| |||||| |||||||||||||| ||| | | ||||| |||| |||||| || ||||||| |||||||| | | || ||||||||||||| ||| |
|
|
| T |
1967259 |
aaacgtagataaaattttatgatcatcgcttgaagtgtaacagtaataatatagttttatatgtatgataacatgtccaaccgtataaactttgcaagat |
1967358 |
T |
|
| Q |
117 |
actaattacttccatgtaattgaattagaagaaacggttctttcatcttatatcgttaaaacaacttcatcacttggcctttaatccaaaatgatcatca |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| | ||| |||||||||||||| |||||| ||||| ||||||||||| |||||||| || || |
|
|
| T |
1967359 |
actaattacttccatgtaattgaatttgaagaagtagttttctcaacttatatcgttaaatcaacttaatcacctggcctttaattcaaaatgaacaaca |
1967458 |
T |
|
| Q |
217 |
aaatctaaaagaaaaatatatttaaataaacattagtcacttaacttgatag-aacagttatatgtaaatagtc--caaaaattgtactatgcgagtcaa |
313 |
Q |
| |
|
||||| |||||||||| ||||||||| | ||| |||||||||||||||||| |||| |||| ||||||| || |||||| | |||| |||||| |
|
|
| T |
1967459 |
aaatcagaaagaaaaatttatttaaatcagcatcagtcacttaacttgatagaaacaattatgcgtaaatattcaaaaaaaatataattatgtgagtcag |
1967558 |
T |
|
| Q |
314 |
tcaatagattttgcacctctatttaccaatttcgttcccttttccatgtttcctggtgacatccatttgctacctt |
389 |
Q |
| |
|
|||||||| ||||||||||| | ||| ||||| |||||||||| |||| | |||||||||||||||||| |||| |
|
|
| T |
1967559 |
ctaatagattatgcacctctatcttccagtttcgatcccttttccttgttccttggtgacatccatttgctgcctt |
1967634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 39702220 - 39702018
Alignment:
| Q |
17 |
aaacggagataagatttt-atgatcatcacttcatgcataacaataattgtatagtcttgtatgtatcataacatgccgagccatataaactttgcatga |
115 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| || ||||| |||||||||| ||||||| ||||||| | | |||||||||||||||| |
|
|
| T |
39702220 |
aaacggagataagatttttataatcatcacttcaggcctaaca------gtatagtcttatatgtatggtaacatgtttaactgtataaactttgcatga |
39702127 |
T |
|
| Q |
116 |
tactaattacttccatgtaattgaattagaagaaacggttctttcatcttatat-cgttaaaacaacttcatcacttggcctttaatccaaaatgatcat |
214 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39702126 |
tactaatt---tccatgtaattgagatagaagaagcggttctctcgaattatattcgttaaatcaacttcatcacttggcctttaatccaaaatgatcaa |
39702030 |
T |
|
| Q |
215 |
caaaatctaaaa |
226 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39702029 |
caaaatctaaaa |
39702018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University