View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12869_high_2 (Length: 366)
Name: NF12869_high_2
Description: NF12869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12869_high_2 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 24 - 365
Target Start/End: Original strand, 30264423 - 30264764
Alignment:
| Q |
24 |
catcatcaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttgg |
123 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264423 |
catcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttgg |
30264522 |
T |
|
| Q |
124 |
tgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatct |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264523 |
tgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatct |
30264622 |
T |
|
| Q |
224 |
tttggattaacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcacatgcacatgttaatatttgttatat |
323 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30264623 |
tttggatttacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcatatgcacatgttaatatttgttatat |
30264722 |
T |
|
| Q |
324 |
gatagatatgtaaggaaatataaacactaaaacacataaaaa |
365 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
30264723 |
gataaatatgtaaggaaatataaacactaaaacacataaaaa |
30264764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 24 - 365
Target Start/End: Complemental strand, 30287765 - 30287424
Alignment:
| Q |
24 |
catcatcaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttgg |
123 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30287765 |
catcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttgg |
30287666 |
T |
|
| Q |
124 |
tgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatct |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30287665 |
tgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatct |
30287566 |
T |
|
| Q |
224 |
tttggattaacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcacatgcacatgttaatatttgttatat |
323 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
30287565 |
tttggatttacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcatatgcacatgttaatatttgttatat |
30287466 |
T |
|
| Q |
324 |
gatagatatgtaaggaaatataaacactaaaacacataaaaa |
365 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
30287465 |
gataaatatgtaaggaaatataaacactaaaacacataaaaa |
30287424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 67 - 283
Target Start/End: Original strand, 30271360 - 30271576
Alignment:
| Q |
67 |
agcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatca |
166 |
Q |
| |
|
|||||| ||||||||||| || || | ||||||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |
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|
| T |
30271360 |
agcatttcttgttggatatttaattaaatgtatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatat |
30271459 |
T |
|
| Q |
167 |
tgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctt |
266 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||| | |||||| | | |||||||| || || |||||||| |||||||||||||| || ||||||| |
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|
| T |
30271460 |
tgatcatacaattcaattgattcacttttagggaatattggaacgtgcatatgatcttcaggcttcacctctacctttttccatttcattttgccatctt |
30271559 |
T |
|
| Q |
267 |
tatctctcacctatata |
283 |
Q |
| |
|
| ||||||||||||||| |
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|
| T |
30271560 |
tgtctctcacctatata |
30271576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 67 - 283
Target Start/End: Complemental strand, 30280829 - 30280613
Alignment:
| Q |
67 |
agcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatca |
166 |
Q |
| |
|
|||||||||||||||||| || || | ||| ||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |
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|
| T |
30280829 |
agcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatat |
30280730 |
T |
|
| Q |
167 |
tgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctt |
266 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||| | ||||||||| | |||||||| || || |||||| ||||||||| |||| || ||||||| |
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|
| T |
30280729 |
tgatcatacaattcaattgattcacttttagggaatattggaaccttcatatgatcttcaggcttcgcctctatttttttccacatcattttgccatctt |
30280630 |
T |
|
| Q |
267 |
tatctctcacctatata |
283 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30280629 |
gatctctcacctatata |
30280613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 67 - 283
Target Start/End: Original strand, 30304427 - 30304643
Alignment:
| Q |
67 |
agcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatca |
166 |
Q |
| |
|
|||||||||||||||||| || || | ||| ||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |
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|
| T |
30304427 |
agcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatat |
30304526 |
T |
|
| Q |
167 |
tgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctt |
266 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||| | ||||||||| | |||||||| || || |||||| ||||||||| |||| || ||||||| |
|
|
| T |
30304527 |
tgatcatacaattcaattgattcacttttagggaatattggaaccttcatatgatcttcaggcttcgcctctatttttttccacatcattttgccatctt |
30304626 |
T |
|
| Q |
267 |
tatctctcacctatata |
283 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30304627 |
gatctctcacctatata |
30304643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 30048621 - 30048723
Alignment:
| Q |
24 |
catcatcaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttgg |
123 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| |||| ||| |
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|
| T |
30048621 |
catcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtgg |
30048720 |
T |
|
| Q |
124 |
tgt |
126 |
Q |
| |
|
||| |
|
|
| T |
30048721 |
tgt |
30048723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 30062962 - 30063064
Alignment:
| Q |
24 |
catcatcaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttgg |
123 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| |||| ||| |
|
|
| T |
30062962 |
catcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtgg |
30063061 |
T |
|
| Q |
124 |
tgt |
126 |
Q |
| |
|
||| |
|
|
| T |
30063062 |
tgt |
30063064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 30032381 - 30032483
Alignment:
| Q |
30 |
caagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||| |||||||||| ||||||| ||| ||||||||||| ||||| |||| |||||| || |
|
|
| T |
30032381 |
caagtgcatgatgaagtttgaatattatggtgcaagcttcattggttgttggataattgataatatgaatttcccaaagtggtttatcttgtggtgttct |
30032480 |
T |
|
| Q |
130 |
ttc |
132 |
Q |
| |
|
||| |
|
|
| T |
30032481 |
ttc |
30032483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 30228760 - 30228850
Alignment:
| Q |
24 |
catcatcaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggttt |
114 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
30228760 |
catcaccaagtgcatgattaagtttgaatattatggtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggttt |
30228850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 30220261 - 30220209
Alignment:
| Q |
67 |
agcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctt |
119 |
Q |
| |
|
|||||||||||||||||| || || | ||| ||||||||||||||||| |||| |
|
|
| T |
30220261 |
agcattgcttgttggatatttaatcaaatgaatttcccaaaggggtttatctt |
30220209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 79601 - 79679
Alignment:
| Q |
30 |
caagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaag |
108 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||| ||||| |||||||||| || |||| |||||| |||||||| |
|
|
| T |
79601 |
caagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatatgtatctcccaaag |
79679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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