View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12869_high_3 (Length: 360)
Name: NF12869_high_3
Description: NF12869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12869_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 5400147 - 5400505
Alignment:
| Q |
2 |
gaggagtgtgctaaatgcttatgtattagtggtatatatat--------gccatatgttcttatagtgactctgaaaatatatgagaacnnnnnnnnntt |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
5400147 |
gaggagtgtgctaaatgcttatgtattagtggtatatatatatatatatgtcatatgttcttatagtgactctgaaaatatgtgagaacaaaaaaaaaat |
5400246 |
T |
|
| Q |
94 |
catcatggttttcagtttcatgaaacatgctgaatagaaacttgagtagagatattcatgattcagtgactgagtatgttagtgtgagaattttataacc |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5400247 |
catcatggttttcagtttcatgaaacatgctgaatagaaacttgagtagagatattcatgattcattgactgagtatgttagtgtgagaattttataacc |
5400346 |
T |
|
| Q |
194 |
gcatagaaattggaaaagtgaaaatgtaattgaagaaggaaagcgcgagtggtgaagatagattagtaggtttatatttcttccataaagatgaacataa |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5400347 |
gcatagaaattggaaaagtgaaaatgtaattgaagaaggaaagcgcgagtggtgaagatagattagtaggtttatatttcttccataaagatgaacataa |
5400446 |
T |
|
| Q |
294 |
aatttaggttggctgaaaatgctgtaaatcatgatatttgcgtaaaatctctctgctcc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5400447 |
aatttaggttggctgaaaatgctgtaaatcatgatatttgcgtaaaatctctctgctcc |
5400505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University