View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12869_high_4 (Length: 312)
Name: NF12869_high_4
Description: NF12869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12869_high_4 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 146 - 312
Target Start/End: Original strand, 48569141 - 48569307
Alignment:
| Q |
146 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48569141 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctttttggttggaaatgctccaatggcccatatggttgttc |
48569240 |
T |
|
| Q |
246 |
agcctaatgaagaccattcaggatcctcatcttttaaggtatattcatggaaaattatggtactttg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48569241 |
agcctaatgaagaccattcaggatcctcatcttttaaggtatattcatagaaaattatggtactttg |
48569307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 48569018 - 48569090
Alignment:
| Q |
15 |
aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48569018 |
aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg |
48569090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 152 - 287
Target Start/End: Complemental strand, 10821937 - 10821802
Alignment:
| Q |
152 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta |
251 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| |||||||||| || ||||| |||||||| ||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
10821937 |
ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctttcgaatacatattttgtcggaaatgctccgatggcccatacggttgttcagccta |
10821838 |
T |
|
| Q |
252 |
atgaagaccattcaggatcctcatcttttaaggtat |
287 |
Q |
| |
|
| ||||| || ||||||| ||||||||||||||| |
|
|
| T |
10821837 |
aagaagagcagacaggatcaacatcttttaaggtat |
10821802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 152 - 287
Target Start/End: Original strand, 36145449 - 36145584
Alignment:
| Q |
152 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta |
251 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| | |||||||| || ||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
36145449 |
ttgcagtgtgcagaatctgccttgaaatcagtcttgggagatctttcaaatacatattttgtcggaaatgctccgatggcccatattgttgttcagccta |
36145548 |
T |
|
| Q |
252 |
atgaagaccattcaggatcctcatcttttaaggtat |
287 |
Q |
| |
|
| ||||| || ||||||| ||||||||||||||| |
|
|
| T |
36145549 |
aagaagagcagacaggatcaacatcttttaaggtat |
36145584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 10822265 - 10822202
Alignment:
| Q |
17 |
cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
80 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
10822265 |
cctgtgtggcattttccagaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc |
10822202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 36145131 - 36145194
Alignment:
| Q |
17 |
cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
80 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
36145131 |
cctgtgtggcattttccagaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc |
36145194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University