View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1286R-Insertion-1 (Length: 815)
Name: NF1286R-Insertion-1
Description: NF1286R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1286R-Insertion-1 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 314 - 802
Target Start/End: Complemental strand, 27879263 - 27878762
Alignment:
| Q |
314 |
tgtgaacacaggaaagtggtaaagccacttttgttgaactgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttac |
413 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27879263 |
tgtggacacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttac |
27879164 |
T |
|
| Q |
414 |
tacgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcaccagtataaatagcatg-ctcttgtaccattgttct-a |
511 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||| | || | |
|
|
| T |
27879163 |
tatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactca |
27879064 |
T |
|
| Q |
512 |
tac---------accatcac-ataacaaagtaacacaacaactacttgttcttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcc |
601 |
Q |
| |
|
| | | || ||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27879063 |
tcccaaattagtaacaacaccagaacaaagtaacacaacaactacttgttcttagtagaatagagagaggaaaaatatagagagaaaaattagtttctcc |
27878964 |
T |
|
| Q |
602 |
tgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaat |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27878963 |
tgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaat |
27878864 |
T |
|
| Q |
702 |
tttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctctt |
800 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27878863 |
ttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctt |
27878764 |
T |
|
| Q |
801 |
tt |
802 |
Q |
| |
|
|| |
|
|
| T |
27878763 |
tt |
27878762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 561 - 802
Target Start/End: Original strand, 1234725 - 1234965
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
1234725 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
1234822 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1234823 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
1234922 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1234923 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
1234965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 561 - 802
Target Start/End: Complemental strand, 26976424 - 26976184
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
26976424 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
26976327 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
26976326 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccttggttttttccccttatttgtt |
26976227 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26976226 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
26976184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 561 - 802
Target Start/End: Complemental strand, 27874283 - 27874043
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27874283 |
atagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtg |
27874186 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
27874185 |
gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgtt |
27874086 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27874085 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
27874043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 453 - 802
Target Start/End: Original strand, 30966566 - 30966916
Alignment:
| Q |
453 |
ttggttggggcatggctctttcaccagtataaatagcatgctcttgtaccattgttctatacaccatcacataacaaagtaacacaacaactact----t |
548 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | | | | |
|
|
| T |
30966566 |
ttggttggggcatggctctttcactagtataaatagcatgctcttgtaccattgttcctcacaccatcacagaacaaagtaacacaacagcaagtgtttt |
30966665 |
T |
|
| Q |
549 |
gttct-tagtagaatagtgagaggaaaaatatagagagaaa-aattagtttctcct-gtgaggtttctcctaggtagtgttagtgtttgtattctcctat |
645 |
Q |
| |
|
||||| ||||||| | ||||| ||||||||||||||||| || |||||||| || |||||||||||||||||||| | ||| ||||| |||| |
|
|
| T |
30966666 |
gttctatagtagagtta-gagagaaaaaatatagagagaaagaaatagtttctacttgtgaggtttctcctaggtagcctcagt------attcttctat |
30966758 |
T |
|
| Q |
646 |
ttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggtttt |
745 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| | |||||||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
30966759 |
ttacaagagagagtggtaattgtactctccttgcatttagagagaggttctgcaatttcttccacttagtgaaagttctctactcttgccccgtgatttt |
30966858 |
T |
|
| Q |
746 |
-ttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30966859 |
atttcccttatttgttgatgggtttccacgtaaatattgtgtgttcagttcctctttt |
30966916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 444 - 802
Target Start/End: Original strand, 30986430 - 30986776
Alignment:
| Q |
444 |
taaatgcaattggttggggcatggctctttcaccagtataaatagcatgctcttgtaccattgttctatacaccatcacataacaaagtaacacaacaac |
543 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
30986430 |
taaatgtaattggttggggcatggctctttcactaatataaatagcatgctcttgtactattgttactcacaccatcacagaacaaagtaacacaacaac |
30986529 |
T |
|
| Q |
544 |
tacttgttcttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctg-tgaggtttctcctaggtagtgttagtgtttgtattctcc |
642 |
Q |
| |
|
| | || | ||| | ||| |||| ||| ||||| ||||||||||| |||||||||||||||||||||| ||| ||||| | |
|
|
| T |
30986530 |
aagtgttttgttctagtagagttagag---------agaaagaaa---tagtttctcctcatgaggtttctcctaggtagtgtcagt------attcttc |
30986611 |
T |
|
| Q |
643 |
tatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtgg- |
741 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30986612 |
tatttacaagagagagtggtaattgtactctccttgcatttagagagaggtcctgcaatttcttccacttagtgaaagttctctactcttgccccgtggt |
30986711 |
T |
|
| Q |
742 |
-ttttttccccttatttgttgagggg---tttccacgtaaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30986712 |
tttttttttccttatttgttgaggggtactttccacgtaaatattgtgcgttcagttcctctttt |
30986776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 563 - 802
Target Start/End: Original strand, 18967912 - 18968141
Alignment:
| Q |
563 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
662 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||| |||| |||||||||||||| | ||||||| | | |
|
|
| T |
18967912 |
agtgagaggaaaaatataaagaggaaatatagtttctcttgtgaggtttctcctag----------tgttagtattctcctatttc-atgagagag-gct |
18967999 |
T |
|
| Q |
663 |
aattgtactctccttgtagttagagagaggtcctgtaatttt-ttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttg |
761 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||| ||||||| | |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18968000 |
aatttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttttctactcttgccccgtggttttttccccttatttgttg |
18968099 |
T |
|
| Q |
762 |
aggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
18968100 |
aggggtttccacgtaaaatattatgtattcagttcctctttt |
18968141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 665 - 802
Target Start/End: Original strand, 21966677 - 21966813
Alignment:
| Q |
665 |
ttgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgagg |
764 |
Q |
| |
|
|||||||||| ||| | ||||||||||||| | |||||| ||||| |||||||||||||||||||||| |||| | | |||||||| |||||| |||||| |
|
|
| T |
21966677 |
ttgtactctctttgaaattagagagaggtcttataatttcttccatttagtgaaagttctctactcttgccccat-gatttttccctttatttattgagg |
21966775 |
T |
|
| Q |
765 |
ggtttccacgtaaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||| |||||||| | |||| |||||||||||| |
|
|
| T |
21966776 |
ggtttccacataaatattttatgtttagttcctctttt |
21966813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 708 - 802
Target Start/End: Complemental strand, 23012647 - 23012555
Alignment:
| Q |
708 |
cacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| ||| | |||||| || | ||||||||||||||| |||||||||| ||| |||||| |
|
|
| T |
23012647 |
cacttagtgaaagttctctactcttgccca-tggtttttccccttaatttgt-gacgagtttccacgtaaataatgtgtgttcaattcttctttt |
23012555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 313 - 802
Target Start/End: Complemental strand, 30950737 - 30950236
Alignment:
| Q |
313 |
ttgtgaacacaggaaagtggtaaagccacttttgttgaactgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagtta |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950737 |
ttgtgaacacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagtta |
30950638 |
T |
|
| Q |
413 |
ctacgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcaccagtataaatagcatg-ctcttgtaccattgttct- |
510 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||| | || |
|
|
| T |
30950637 |
ctatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactc |
30950538 |
T |
|
| Q |
511 |
atac---------accatcac-ataacaaagtaacacaacaactacttgttcttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctc |
600 |
Q |
| |
|
|| | | || ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950537 |
atcccaaattagtaacaacaccataacaaagtaacacaacaactacttgttcttagtagaatagagagaggaaaaatatagagagaaaaattagtttctc |
30950438 |
T |
|
| Q |
601 |
ctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaa |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| |
|
|
| T |
30950437 |
ctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactttccttgtatttagagagaggttctgtaa |
30950338 |
T |
|
| Q |
701 |
ttttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctct |
799 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30950337 |
tttcttccacttagtgaaagttctctactcttgccccgtggtttttt-cccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctct |
30950239 |
T |
|
| Q |
800 |
ttt |
802 |
Q |
| |
|
||| |
|
|
| T |
30950238 |
ttt |
30950236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 314 - 802
Target Start/End: Complemental strand, 30946030 - 30945530
Alignment:
| Q |
314 |
tgtgaacacaggaaagtggtaaagccacttttgttgaactgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946030 |
tgtgaacacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttac |
30945931 |
T |
|
| Q |
414 |
tacgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcaccagtataaatagcatg-ctcttgtaccattgttct-a |
511 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||| | || | |
|
|
| T |
30945930 |
tatgcaaagttgaaaattcacatgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactca |
30945831 |
T |
|
| Q |
512 |
tac---------accatcac-ataacaaagtaacacaacaactacttgttcttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcc |
601 |
Q |
| |
|
| | | || ||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945830 |
tcccaaattagtaacaacaccagaacaaagtaacacaacaactacttgttcttagtagaatagagagaggaaaaatatagagagaaaaattagtttctcc |
30945731 |
T |
|
| Q |
602 |
tgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaat |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
30945730 |
tgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggttctgtaat |
30945631 |
T |
|
| Q |
702 |
tttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctctt |
800 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30945630 |
ttcttccacttagtgaaagttctctactcttgccccgtgatttttt-cccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctt |
30945532 |
T |
|
| Q |
801 |
tt |
802 |
Q |
| |
|
|| |
|
|
| T |
30945531 |
tt |
30945530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 561 - 802
Target Start/End: Complemental strand, 24520318 - 24520078
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
24520318 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
24520221 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24520220 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
24520121 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24520120 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
24520078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 561 - 802
Target Start/End: Original strand, 42265927 - 42266167
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42265927 |
atagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtg |
42266024 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42266025 |
gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
42266124 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42266125 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
42266167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 561 - 802
Target Start/End: Original strand, 42270646 - 42270886
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42270646 |
atagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtg |
42270743 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42270744 |
gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
42270843 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42270844 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
42270886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 561 - 802
Target Start/End: Complemental strand, 48702114 - 48701874
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
48702114 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
48702017 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48702016 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
48701917 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48701916 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
48701874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 561 - 802
Target Start/End: Complemental strand, 48697425 - 48697184
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
48697425 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
48697328 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggtt-ttttccccttatttgt |
759 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
48697327 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgt |
48697228 |
T |
|
| Q |
760 |
tgaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48697227 |
tgaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
48697184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 313 - 492
Target Start/End: Complemental strand, 48697669 - 48697490
Alignment:
| Q |
313 |
ttgtgaacacaggaaagtggtaaagccacttttgttgaactgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagtta |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697669 |
ttgtgaacacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagtta |
48697570 |
T |
|
| Q |
413 |
ctacgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcaccagtataaatagcatg |
492 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48697569 |
ctatgcaaagttgaaaattcacatgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatg |
48697490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 314 - 492
Target Start/End: Complemental strand, 48702357 - 48702179
Alignment:
| Q |
314 |
tgtgaacacaggaaagtggtaaagccacttttgttgaactgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702357 |
tgtgaacacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttac |
48702258 |
T |
|
| Q |
414 |
tacgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcaccagtataaatagcatg |
492 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48702257 |
tatgcaaagttgaaaatccacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatg |
48702179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 563 - 802
Target Start/End: Original strand, 10427315 - 10427544
Alignment:
| Q |
563 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
662 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||| |
|
|
| T |
10427315 |
agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctag----------tgttagtattctcctatttc-aagagagag-ggt |
10427402 |
T |
|
| Q |
663 |
aattgtactctccttgtagttagagagaggtcctgtaatttt-ttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttg |
761 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||| ||||||| | |||||||||||||||||| |||||| || |||||| ||||||||||||||||||||| |
|
|
| T |
10427403 |
aatttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttatctactttttccccgtagttttttccccttatttgttg |
10427502 |
T |
|
| Q |
762 |
aggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
10427503 |
aggggtttccgcgtaaaatattgtgtgttcagttcctctttt |
10427544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 701 - 802
Target Start/End: Original strand, 17248011 - 17248112
Alignment:
| Q |
701 |
ttttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctctt |
800 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| || |||||||||||||||||||| || |||| |||||| ||||||||||||| || |||| ||||| |
|
|
| T |
17248011 |
ttttttccacttaatgaaagttctatactcttatccggtggttttttccccttatttattaagggatttccatgtaaatattgtgtatttagtttctctt |
17248110 |
T |
|
| Q |
801 |
tt |
802 |
Q |
| |
|
|| |
|
|
| T |
17248111 |
tt |
17248112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 648 - 802
Target Start/End: Original strand, 48782850 - 48782991
Alignment:
| Q |
648 |
ataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggtttttt |
747 |
Q |
| |
|
||||||||||||||||||||||||| | |||| ||||||||||||| | |||||| |||||||||||||||||||| |||| || ||||| |
|
|
| T |
48782850 |
ataagagagagtggtaattgtactc--catgtatttagagagaggtcatctaatttcttccacttagtgaaagttct---------ccccatg--ttttt |
48782936 |
T |
|
| Q |
748 |
ccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48782937 |
ccctttatttgttgagaaatttccacgtaaatattgtgtgttcagttcctgtttt |
48782991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 624 - 748
Target Start/End: Original strand, 1979269 - 1979391
Alignment:
| Q |
624 |
gttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttc |
723 |
Q |
| |
|
||||||| | |||||||||| |||||||||||||||||||| | ||| ||||||| | || ||||||||| |||||||| |||| |||| |||||||| |
|
|
| T |
1979269 |
gttagtgctagtattctcctgtttataagagagagtggtaaatataccctccttgcattt--agagaggtcgtgtaatttcttcctcttactgaaagtta |
1979366 |
T |
|
| Q |
724 |
tctactcttaccccgtggttttttc |
748 |
Q |
| |
|
|||||||||||| | || ||||||| |
|
|
| T |
1979367 |
tctactcttacctcatgcttttttc |
1979391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 752 - 789
Target Start/End: Original strand, 1979567 - 1979604
Alignment:
| Q |
752 |
ttatttgttgaggggtttccacgtaaatattgtgtgtt |
789 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1979567 |
ttatttgttgaggggtttccacgtaaatattgtgtgtt |
1979604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 513 - 802
Target Start/End: Original strand, 54545858 - 54546147
Alignment:
| Q |
513 |
acaccatcacataacaaagtaacacaacaactacttgttcttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttc |
612 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545858 |
acaccatcacagaacaaagtaacacaacaactacttgttcttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttc |
54545957 |
T |
|
| Q |
613 |
tcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccactt |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54545958 |
tcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcatccactt |
54546057 |
T |
|
| Q |
713 |
agtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
54546058 |
agtgaaagttctctactctagccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtatgttcagttcctctttt |
54546147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 561 - 802
Target Start/End: Complemental strand, 5823568 - 5823328
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
5823568 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
5823471 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5823470 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
5823371 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5823370 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
5823328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 561 - 802
Target Start/End: Complemental strand, 5818806 - 5818566
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
5818806 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
5818709 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
5818708 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttattagtt |
5818609 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5818608 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
5818566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 314 - 492
Target Start/End: Complemental strand, 2817788 - 2817609
Alignment:
| Q |
314 |
tgtgaacacaggaaagtgg-taaagccacttttgttgaactgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagtta |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2817788 |
tgtgaacacaggaaagtgcataaagccacttttgttgaattgttatcacatggcagtaaaatatgttggcatgtaatttctatgttcacatgggaagtta |
2817689 |
T |
|
| Q |
413 |
ctacgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcaccagtataaatagcatg |
492 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
2817688 |
ctatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactagtatacatagcatg |
2817609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 634 - 802
Target Start/End: Complemental strand, 2817486 - 2817316
Alignment:
| Q |
634 |
gtattctcctatttataagagagag--tggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactct |
731 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| || |||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
2817486 |
gtattctcctatttataagagagagagtggtgattgtactctccttgtatttagagagagttcttgtaatttcttccacttagtgagagttctttactct |
2817387 |
T |
|
| Q |
732 |
taccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
| ||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2817386 |
tgccctgtggtttttt-cccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
2817316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 686 - 802
Target Start/End: Complemental strand, 31204936 - 31204819
Alignment:
| Q |
686 |
agagaggtcctgtaattttttccacttagtgaaagttctctactcttacc-ccgtggttttttccccttatttgttgaggggtttccacgtaaatattgt |
784 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||| || || ||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31204936 |
agagaggttttgtaatttttcccacttagtgaaagttctctactattgcctccgtgattttttcctcttatttgttgaggggtttccacgtaaatattgt |
31204837 |
T |
|
| Q |
785 |
gtgttcagttcctctttt |
802 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
31204836 |
gagttcagttcctctttt |
31204819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 705 - 802
Target Start/End: Complemental strand, 24659285 - 24659189
Alignment:
| Q |
705 |
ttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
24659285 |
ttccacttagtgaaagttct--actcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatgttgtgtgttcagttcctctttt |
24659189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 742 - 802
Target Start/End: Original strand, 4579254 - 4579315
Alignment:
| Q |
742 |
ttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4579254 |
ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
4579315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 563 - 703
Target Start/End: Complemental strand, 24671301 - 24671173
Alignment:
| Q |
563 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
662 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| ||| |
|
|
| T |
24671301 |
agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcc----------tagtgttagtattctcctattt-caagagagag-ggt |
24671214 |
T |
|
| Q |
663 |
aattgtactctccttgtagttagagagaggtcctgtaattt |
703 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
24671213 |
aatttgtctctccttgtatttagagagaagtcttgtaattt |
24671173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 802
Target Start/End: Original strand, 35977103 - 35977243
Alignment:
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttc-tctactcttaccccgtggttttttccccttatttgt |
759 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||| || | ||||||| || ||| |||||||| ||| ||| |
|
|
| T |
35977103 |
gtaattgttctctccttgtatttagagagaagtcttgtaattttttccacttagtgaaaactcttttactcttgccaagtgagtttttccc--tatatgt |
35977200 |
T |
|
| Q |
760 |
tgaggggtttccacgtaaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||| || ||| ||||||||||||| |||||| || ||||||| |
|
|
| T |
35977201 |
tgatggttttttacgtaaatattgtttgttcaatttctctttt |
35977243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 563 - 614
Target Start/End: Original strand, 4579126 - 4579177
Alignment:
| Q |
563 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctc |
614 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
4579126 |
agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctc |
4579177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 9443663 - 9443821
Alignment:
| Q |
14 |
cacaccattattgaaaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagta |
113 |
Q |
| |
|
|||||||||||| ||||| | ||||||| ||| ||||||||| || |||||||| |||||||||| || |||| ||| ||| | |||| ||||| | |
|
|
| T |
9443663 |
cacaccattattaaaaatcacctcattctttttcttccaaataacccaaatagaatcaagccaaattaagaaaaatacccgtctcattttcaaagaagga |
9443762 |
T |
|
| Q |
114 |
gcctcatttaaccaacattcaaaatgtacaaagagattatggggtattatgaagtgaaa |
172 |
Q |
| |
|
||||||| |||| |||||||||||| ||| |||||||| ||||||| ||| ||||| |
|
|
| T |
9443763 |
gcctcataataccaccattcaaaatgtgaaaaaagattatgtggtattacgaaatgaaa |
9443821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 439 - 802
Target Start/End: Original strand, 30234920 - 30235286
Alignment:
| Q |
439 |
tgccataaatgcaattggttggggcatggctctttcaccagtataaatagcatgctcttgtaccattgttctatacaccatcacataacaaagtaacaca |
538 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | |||||| | |||||||||||||| |
|
|
| T |
30234920 |
tgccataaatgtaattggttggggcatggctctttcactagtataaatagcatgttcttgtaccattgtttctcatcccatcagagaacaaagtaacaca |
30235019 |
T |
|
| Q |
539 |
acaactacttgttcttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcc-tgtgaggtttctcctaggtagtgttagtgtttgtat |
637 |
Q |
| |
|
||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||| |
|
|
| T |
30235020 |
acaactacttgttctcaatagagtagtgagaggaaaaatatagagagaaaaattagtttctccttatgaggtttctcttacgtagtgttagtgtttgtat |
30235119 |
T |
|
| Q |
638 |
tctcctatttataagagagagtggtaattgtactctccttgtagtta-gagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccc |
736 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||| | ||| |||||||| |||||||||| || |
|
|
| T |
30235120 |
tctcctatttataagagagagtggtaattgtactctccttataaataggagagaggtcctgtaatttcttctagttattgaaagttttctactcttatcc |
30235219 |
T |
|
| Q |
737 |
cgtgg-ttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30235220 |
cgtggtttttttccccttattcgttgaggggtttccacgtaaatattgtgtgttcagttcctctttt |
30235286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 563 - 802
Target Start/End: Complemental strand, 16183913 - 16183684
Alignment:
| Q |
563 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
662 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||| |
|
|
| T |
16183913 |
agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctag----------tgttagtattctcctatttc-aagagagag-ggt |
16183826 |
T |
|
| Q |
663 |
aattgtactctccttgtagttagagagaggtcctgtaatttt-ttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttg |
761 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16183825 |
aatttgtctctccttgtatttagagagaggtcttgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttg |
16183726 |
T |
|
| Q |
762 |
aggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16183725 |
aggggtttccacgtaaaatattgtgtgttcagttcctctttt |
16183684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 634 - 802
Target Start/End: Complemental strand, 8140183 - 8140017
Alignment:
| Q |
634 |
gtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactctta |
733 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||||||| | ||||||||||| | |||||| ||||||| |||||||||| |||| ||||| |
|
|
| T |
8140183 |
gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtattaagagagaggtcttataatttcttccactgagtgaaagttttctaatctta |
8140086 |
T |
|
| Q |
734 |
ccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
8140085 |
ccccatggttttctccccttatttgttgaggggtttccacataaatattgtgcgttcagtttctctttt |
8140017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 670 - 794
Target Start/End: Complemental strand, 8138645 - 8138521
Alignment:
| Q |
670 |
ctctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggttt |
769 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||| ||||| ||||||||||||||||| |||| || ||||||||| ||||||| |||||| |||||||| |
|
|
| T |
8138645 |
ctctccttgtatttagagggaggtcttgtaatttcttccatttagtgaaagttctctaatcttgcctcgtggttttctccccttgtttgttaaggggttt |
8138546 |
T |
|
| Q |
770 |
ccacgtaaatattgtgtgttcagtt |
794 |
Q |
| |
|
|||| ||| || |||||||| |||| |
|
|
| T |
8138545 |
ccacataattactgtgtgttaagtt |
8138521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 741 - 799
Target Start/End: Complemental strand, 36528529 - 36528471
Alignment:
| Q |
741 |
gttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctct |
799 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36528529 |
gttttttttccttattcgtggaggggtttccacgtaaatattgtgtgttcaattcctct |
36528471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 698 - 802
Target Start/End: Complemental strand, 5102749 - 5102647
Alignment:
| Q |
698 |
taattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcct |
797 |
Q |
| |
|
|||||| | ||||||||| |||||| ||||||||| | || |||||||| ||||||||||||||| |||||| || ||||||||| ||| || ||| ||| |
|
|
| T |
5102749 |
taatttctcccacttagtaaaagttatctactcttgctccatggttttt-ccccttatttgttga-gggttttcatgtaaatattatgtatttagtccct |
5102652 |
T |
|
| Q |
798 |
ctttt |
802 |
Q |
| |
|
||||| |
|
|
| T |
5102651 |
ctttt |
5102647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 18)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 25290615 - 25290336
Alignment:
| Q |
14 |
cacaccattattgaaaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
25290615 |
cacaccattattgaaaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaacaaaatccccttcttaatttcttagaaata |
25290516 |
T |
|
| Q |
114 |
gcctcatttaaccaacattcaaaatgtacaaagagattatggggtattatgaagtgaaattctaaccaacacatc-atcctttgccaaatcctcataacc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25290515 |
gcctcatttaaccaacattcaaaatgtacatagagattatggggtattatgaagtgaaattctaaccaacacatcaatcctttgccaaatcctcataacc |
25290416 |
T |
|
| Q |
213 |
acat--cagtgtaagaaaagatgtgacgtcgtttcttcctccctcccacaaagcatgcaactcttggaagcctcttcatt |
290 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| || ||||| |
|
|
| T |
25290415 |
acatcacaatgtaagaaaagatgtgacgtcgtttcttcctcccacccacaaaacatgcaactcttggaagcttcctcatt |
25290336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 561 - 802
Target Start/End: Complemental strand, 5198948 - 5198708
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
5198948 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
5198851 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5198850 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
5198751 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5198750 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
5198708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 311 - 492
Target Start/End: Complemental strand, 5199194 - 5199013
Alignment:
| Q |
311 |
ttttgtgaacacaggaaagtggtaaagccacttttgttgaactgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagt |
410 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5199194 |
ttttgtgaacataggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagt |
5199095 |
T |
|
| Q |
411 |
tactacgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcaccagtataaatagcatg |
492 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5199094 |
tactatgcaaagttgaaaatccacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatg |
5199013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 565 - 802
Target Start/End: Original strand, 15602905 - 15603141
Alignment:
| Q |
565 |
tgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaa |
664 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || | || ||||||||||| ||| ||||||||| | ||||||||||||||| |||| ||| |||||| |
|
|
| T |
15602905 |
tgagaggaaaaatatagaaagaaaaattagatttttctatgaggtttctcttagtaagtgttagt--tagtattctcctatttacaagatagaatggtaa |
15603002 |
T |
|
| Q |
665 |
ttgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgagg |
764 |
Q |
| |
|
|||||| |||| || | ||||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15603003 |
ttgtacactccatgcatttagagagaggtcttgtaatttcttctacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgagg |
15603102 |
T |
|
| Q |
765 |
ggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15603103 |
ggtttccacgtaaaatattgtgtgttcagttcctctttt |
15603141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 528 - 643
Target Start/End: Original strand, 830176 - 830291
Alignment:
| Q |
528 |
aaagtaacacaacaactacttgttcttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgtta |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
830176 |
aaagtaacacaacaactacttgttcttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgtta |
830275 |
T |
|
| Q |
628 |
gtgtttgtattctcct |
643 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
830276 |
gtgtttgtattctcct |
830291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 528 - 643
Target Start/End: Original strand, 825520 - 825635
Alignment:
| Q |
528 |
aaagtaacacaacaactacttgttcttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgtta |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
825520 |
aaagtaacacaacaactacttgttcttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgcgaggtttctcctaggtagtgtta |
825619 |
T |
|
| Q |
628 |
gtgtttgtattctcct |
643 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
825620 |
gtgtttgtattctcct |
825635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 587 - 802
Target Start/End: Original strand, 28715816 - 28716024
Alignment:
| Q |
587 |
aaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttaga |
686 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||||| | ||||| |
|
|
| T |
28715816 |
aaaaatagtttctcttgtaaggtttctcctaggtagtgttagt------attctcctatttataggaaacggtggtaattgtactctccttgcatttaga |
28715909 |
T |
|
| Q |
687 |
gagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgt |
786 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||||||||| |||| | |||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28715910 |
gagatgtcctgtaatttcttccactttgtgaaagttctctattcttctcttgtgg-tttttccccttatttaatgaggggtttccacgtaaatattgtgt |
28716008 |
T |
|
| Q |
787 |
gttcagttcctctttt |
802 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
28716009 |
gttcaattcctctttt |
28716024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 693 - 802
Target Start/End: Original strand, 825632 - 825743
Alignment:
| Q |
693 |
tcctgtaattttttccacttagtgaaagttctctactcttaccccgtgg-ttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttc |
790 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
825632 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgagtggtttccacgtaaaatattgtgtgttc |
825731 |
T |
|
| Q |
791 |
agttcctctttt |
802 |
Q |
| |
|
|||||||||||| |
|
|
| T |
825732 |
agttcctctttt |
825743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 693 - 802
Target Start/End: Original strand, 830288 - 830399
Alignment:
| Q |
693 |
tcctgtaattttttccacttagtgaaagttctctactcttaccccgtgg-ttttttccccttatttgttgaggggtttccacgt-aaatattgtgtgttc |
790 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
830288 |
tcctgtaatttcttccacttagtgaaagttctccactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc |
830387 |
T |
|
| Q |
791 |
agttcctctttt |
802 |
Q |
| |
|
|||||||||||| |
|
|
| T |
830388 |
agttcctctttt |
830399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 563 - 802
Target Start/End: Complemental strand, 30397191 - 30396964
Alignment:
| Q |
563 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
662 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||||||||||||||| |||||||||| |||| ||||||||||||| || | |||| ||| |
|
|
| T |
30397191 |
agtgagaggaacaatatagagaggaaatatagtttctcctgtgagatttctcctag----------tgttaatattctcctatttc-aacatagag-ggt |
30397104 |
T |
|
| Q |
663 |
aattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaa-gttctctactcttaccccgtggttttttccccttatttgttg |
761 |
Q |
| |
|
|||| ||||||||||| |||| ||||||| |||||||| ||||||||||||||| |||||||||||| ||| ||| |||||| ||||||||||||| |
|
|
| T |
30397103 |
aatttgtctctccttgtatatagaaagaggtcttgtaatttcttccacttagtgaaaagttctctactctcgccctgtgatttttttcccttatttgttg |
30397004 |
T |
|
| Q |
762 |
aggggtttccacgtaaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||||| |||||| |
|
|
| T |
30397003 |
aggggtttcaacgaaaata-tgtgtgttcagttcgtctttt |
30396964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 636 - 786
Target Start/End: Complemental strand, 13844014 - 13843865
Alignment:
| Q |
636 |
attctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttacc |
735 |
Q |
| |
|
|||||||||||| ||| | |||||||||||| || ||| |||||| ||| | || ||||||||||||| ||||||||| ||||| |||| |||| ||| | |
|
|
| T |
13844014 |
attctcctatttttaaaatagagtggtaattttattcttcttgtatttataaaggggtcctgtaatttcttccacttaatgaaaattctatacttttaac |
13843915 |
T |
|
| Q |
736 |
ccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgt |
786 |
Q |
| |
|
| | ||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13843914 |
ctataattttt-ctccttatttgttgaggggtttccacgtaaatattgtgt |
13843865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 628 - 761
Target Start/End: Original strand, 8004161 - 8004292
Alignment:
| Q |
628 |
gtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctcta |
727 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||| ||| | ||| |||||||| | |||||| ||||| | |||||||||| |||| |
|
|
| T |
8004161 |
gtgttagtattctcctatttataagagagagt-gtaattgtactcttcttacatttaaagagaggttttataatttcttccattcagtgaaagttttcta |
8004259 |
T |
|
| Q |
728 |
ctcttaccccgtggttttttccccttatttgttg |
761 |
Q |
| |
|
|| |||||||| | ||||||| ||||||||||| |
|
|
| T |
8004260 |
gtcataccccgttg-tttttcctcttatttgttg |
8004292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 332 - 403
Target Start/End: Complemental strand, 34614301 - 34614229
Alignment:
| Q |
332 |
gtaaagccac-ttttgttgaactgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacat |
403 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
34614301 |
gtaaagccaccttttgttgaattgttgtcacatggcagtaaaacatgttagcatgtaatttctatgtttacat |
34614229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 154
Target Start/End: Original strand, 19251123 - 19251230
Alignment:
| Q |
47 |
cttccaaatcactcaaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagtagcctcatttaaccaacattcaaaatgtacaaag |
146 |
Q |
| |
|
||||||||| | |||||||| ||| |||||||||| |||| |||||||| | ||| |||||||||||||| || ||||||||||||||| | ||||| |
|
|
| T |
19251123 |
cttccaaatagcccaaatagaatcaacccaaatcaaataaaaaccccttctaattttattagaagtagcctccttaaaccaacattcaaaacgaacaaaa |
19251222 |
T |
|
| Q |
147 |
agattatg |
154 |
Q |
| |
|
|||||||| |
|
|
| T |
19251223 |
agattatg |
19251230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 439 - 505
Target Start/End: Original strand, 28715678 - 28715744
Alignment:
| Q |
439 |
tgccataaatgcaattggttggggcatggctctttcaccagtataaatagcatgctcttgtaccatt |
505 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
28715678 |
tgccataaatgtaaatggttggggcatggttctttcactcctataaatagcatgctcttgcaccatt |
28715744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 634 - 786
Target Start/End: Complemental strand, 13840456 - 13840307
Alignment:
| Q |
634 |
gtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactctta |
733 |
Q |
| |
|
||||||| ||||| ||||||||| | ||||||||||||||||| || |||||||||||| ||||||||||| |||| || ||| || ||||||||| |
|
|
| T |
13840456 |
gtattcttttatttttaagagagaattgtaattgtactctccttatatttagagagaggttttgtaatttttt-tacttggtaaaaattttctactcttg |
13840358 |
T |
|
| Q |
734 |
ccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgt |
786 |
Q |
| |
|
| || || |||| |||||| |||||||||| || || ||||||||||||| |
|
|
| T |
13840357 |
ctccatg--ttttcccccttgtttgttgaggaattctcatgtaaatattgtgt |
13840307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 743 - 794
Target Start/End: Original strand, 42117825 - 42117876
Alignment:
| Q |
743 |
tttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagtt |
794 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
42117825 |
tttttccccttattaattgagaggtttctacgtaaatattgtatgttcagtt |
42117876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 508
Target Start/End: Complemental strand, 31593285 - 31593216
Alignment:
| Q |
439 |
tgccataaatgcaattggttggggcatggctctttcaccagtataaatagcatgctcttgtaccattgtt |
508 |
Q |
| |
|
|||||| |||| |||| |||| | |||||||||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
31593285 |
tgccattaatgaaattagttgagacatggctctttcacttctataaataacatgctcttgcaccattgtt |
31593216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 557 - 802
Target Start/End: Complemental strand, 29585597 - 29585353
Alignment:
| Q |
557 |
tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagag |
656 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| | ||||||||||||||||||||||| |
|
|
| T |
29585597 |
tagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtattagt--tagtattctcctatttataagagag |
29585500 |
T |
|
| Q |
657 |
agtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatt |
756 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29585499 |
agtggtaattgtactctctttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatt |
29585400 |
T |
|
| Q |
757 |
tgttgaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29585399 |
tgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
29585353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 561 - 802
Target Start/End: Original strand, 34352272 - 34352512
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
34352272 |
atagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
34352369 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34352370 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
34352469 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34352470 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
34352512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 561 - 802
Target Start/End: Original strand, 34359980 - 34360220
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
34359980 |
atagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
34360077 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34360078 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
34360177 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
34360178 |
gaggggtttctacgtaaaatattgtgtgttcagttcctctttt |
34360220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 561 - 802
Target Start/End: Original strand, 41718434 - 41718674
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
41718434 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
41718531 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41718532 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
41718631 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41718632 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
41718674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 561 - 802
Target Start/End: Original strand, 41723160 - 41723400
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
41723160 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
41723257 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41723258 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
41723357 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41723358 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
41723400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 314 - 476
Target Start/End: Complemental strand, 29585826 - 29585664
Alignment:
| Q |
314 |
tgtgaacacaggaaagtggtaaagccacttttgttgaactgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
29585826 |
tgtgaacacaggaaagtggtaaagccacttttgttgaattgttatcacatggcagtaaaacatgttggcatgtagtttttatgttcacatggaaagttac |
29585727 |
T |
|
| Q |
414 |
tacgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcac |
476 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585726 |
tatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcac |
29585664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 15063133 - 15063174
Alignment:
| Q |
14 |
cacaccattattgaaaataatctcattcctttgcttccaaat |
55 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||||||| |
|
|
| T |
15063133 |
cacaccattattgaagataatctcattcatatgcttccaaat |
15063174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 561 - 802
Target Start/End: Complemental strand, 9439665 - 9439425
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
9439665 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
9439568 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9439567 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
9439468 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9439467 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
9439425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 561 - 802
Target Start/End: Complemental strand, 9444385 - 9444145
Alignment:
| Q |
561 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
660 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
9444385 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
9444288 |
T |
|
| Q |
661 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
760 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9444287 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
9444188 |
T |
|
| Q |
761 |
gaggggtttccacgt-aaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9444187 |
gaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
9444145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 4282241 - 4282118
Alignment:
| Q |
15 |
acaccattattgaaaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagtag |
114 |
Q |
| |
|
||||||||||| || |||| |||||| ||| ||||||||| || |||||||| |||||||||||||| ||||| |||| ||||| |||| |||| | || |
|
|
| T |
4282241 |
acaccattattaaagataacctcatttcttctcttccaaataacccaaatagaagcaagccaaatcaagcaaaatccccgtcttattttcctagatgaag |
4282142 |
T |
|
| Q |
115 |
cctcatttaaccaacattcaaaat |
138 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
4282141 |
cctcataataccaacattcaaaat |
4282118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 563 - 802
Target Start/End: Complemental strand, 27508 - 27279
Alignment:
| Q |
563 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
662 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||| ||||||| |||||||| |||| |
|
|
| T |
27508 |
agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctag----------tgttagtattcacctatttc-aagagaga-tggt |
27421 |
T |
|
| Q |
663 |
aattgtactctccttgtagttagagagaggtcctgtaatttt-ttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttg |
761 |
Q |
| |
|
|||| ||||||||||| ||||||||| || ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27420 |
aatttgtctctccttgtatttagagagaagtattgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttg |
27321 |
T |
|
| Q |
762 |
aggggtttccacgtaaa-tattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
27320 |
aggggtttccacgtaaagtattgtgtgttcagtttctctttt |
27279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 563 - 802
Target Start/End: Original strand, 46191266 - 46191493
Alignment:
| Q |
563 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
662 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||| |
|
|
| T |
46191266 |
agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctag----------tgttagtattctcctatttc-aagagagag-ggt |
46191353 |
T |
|
| Q |
663 |
aattgtactctccttgtagttagagagaggtcctgtaatttt-ttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttg |
761 |
Q |
| |
|
|||| |||||||| || ||||||||| ||| ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46191354 |
aatttgtctctccttctatttagagagaagtcttgtaattgtcttccacttagtgaaagttctctactcttgtcccgtggttttttccccttatttgttg |
46191453 |
T |
|
| Q |
762 |
aggggtttccacgtaaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
46191454 |
aggggtttccacgtaaa-atattgtgttcagttcctctttt |
46191493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 626 - 802
Target Start/End: Original strand, 4130173 - 4130348
Alignment:
| Q |
626 |
tagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttt-ttccacttagtgaaagttct |
724 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||| ||||||| ||||||||||| ||||||||| ||| ||||||| | |||||||||||||||||||| |
|
|
| T |
4130173 |
tagtgttagtattgtcctatttc-aagagagag-ggtaatttgtctctccttgtatttagagagaagtcttgtaattatcttccacttagtgaaagttct |
4130270 |
T |
|
| Q |
725 |
ctactcttaccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4130271 |
ctactcttgccccgtggttttttccctttatttgttgagggatttccacgtaaattttgtgtgttcagttcctctttt |
4130348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 670 - 802
Target Start/End: Complemental strand, 30697300 - 30697168
Alignment:
| Q |
670 |
ctctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggttt |
769 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
30697300 |
ctctccttgtatttagaaagaggtcttgtaatttcttccacttagtgaaagttctctactcttgccacgtggctttttccccttatttgttgaggggttt |
30697201 |
T |
|
| Q |
770 |
ccacgtaaatattgtgtgttcagttcctctttt |
802 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| |
|
|
| T |
30697200 |
ccacgtaaatattttgtgttaagttcctctttt |
30697168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 17193098 - 17193029
Alignment:
| Q |
14 |
cacaccattattgaaaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaa |
83 |
Q |
| |
|
||||||||| |||||||| |||||||| ||| ||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
17193098 |
cacaccatttttgaaaattatctcatttcttctcttccaaataacccaaatagaagcaagccaaatcaaa |
17193029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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