View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1286R-Insertion-2 (Length: 576)
Name: NF1286R-Insertion-2
Description: NF1286R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1286R-Insertion-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 9 - 576
Target Start/End: Original strand, 49584279 - 49584846
Alignment:
| Q |
9 |
cccccatgttgatgatgtaaaatccaatgaagttgttctggtcggtccttcaaaaataccgaagggaaaagcttgtgcaatgcttgaaccctcagaaata |
108 |
Q |
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| T |
49584279 |
cccccatgttgatgatgtaaaatccaatgaagctgttctggtcggtccttcaaaaataccgaagggaaaagcttgtgcaatgcttgaaccctcagaaata |
49584378 |
T |
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| Q |
109 |
ataagctttctgacaggaaatttcagattaagtaaatctcgaactgatgatctctttcgggaagccgtttggcctcgtctacttgcaagaggttggcact |
208 |
Q |
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| T |
49584379 |
ataagctttctgacaggaaacttcagattaagtaaatctcgaactgatgatctcttttgggaagccgtttggcctcgtctacttgcaagaggttggcact |
49584478 |
T |
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| Q |
209 |
cggaggaacctagatgttataattatgttccttgtaagaattctatggtcttccttgtccctcgagttaaacagttttcgaggaatctgctgaagggggt |
308 |
Q |
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| T |
49584479 |
cggaggaacctagatgttataattatgttccttgtaagaattctatggtcttccttgtcccccgagttaaacagttttcaaggaatctgctgaagggggt |
49584578 |
T |
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| Q |
309 |
acaatatttcgattctccgtttgaaatcctcaataaagttgcgtccaatcctgagctcattgatctagagaaaaatgcaacggtaattccacctcgggag |
408 |
Q |
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| T |
49584579 |
acaatatttcgattctccgtttgaaatcctcaataaagttgcgtccaatcctgagctcattgatctagagaaaaatgcaacggtaattccacctcgggag |
49584678 |
T |
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| Q |
409 |
aaagttccggaggctttcgcatttggatatctagacaaaaagaagcgcaacagaagtcaggaggactgtttagtatcaaaaccttcacgacatgtgtgtc |
508 |
Q |
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| T |
49584679 |
aaagttccggaggcttttgcatttggatatctagacaaaaagaagcgcaacagaagtcaggaggactgtttagtatcaaaaccttcacgacatgtgtgtc |
49584778 |
T |
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| Q |
509 |
gtaaagtggaaggttctggtagtggtggtgttgcaggttctgaaaatgaggaaggagcaaaggttgtc |
576 |
Q |
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| T |
49584779 |
gtaaagtggaaggttctggtagtggtggtgttgcaggttctgaaaatgaggaaggagcaaaggttgtc |
49584846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 15769610 - 15769547
Alignment:
| Q |
155 |
atgatctctttcgggaagccgtttggcctcgtctacttgcaagaggttggcactcggaggaacc |
218 |
Q |
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| T |
15769610 |
atgatctcttctgggaagctgtttggcctcgcttactggcaagaggttggcactctgagcaacc |
15769547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 46643193 - 46643132
Alignment:
| Q |
157 |
gatctctttcgggaagccgtttggcctcgtctacttgcaagaggttggcactcggaggaacc |
218 |
Q |
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| T |
46643193 |
gatctcttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaacc |
46643132 |
T |
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